Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 1.3e-32 142.5 72 100.0
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.9e-25 118.6 69 84.1
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 3.3e-25 117.9 69 84.1
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.4e-23 112.5 71 77.5
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.8e-23 112.1 71 77.5
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.8e-23 112.1 65 83.1
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.0e-23 110.9 67 79.1
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 6.9e-23 110.2 69 79.7
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.2e-21 105.1 65 78.5
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 8.4e-21 103.2 65 80.0
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 8.4e-21 103.2 64 76.6
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.1e-20 102.8 64 75.0
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 5.5e-20 100.5 66 72.7
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 5.5e-20 100.5 64 75.0
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 6.1e-19 97.1 65 75.4
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 6.1e-19 97.1 64 68.8
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.1e-19 97.1 65 72.3
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.0e-18 96.3 64 70.3
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.0e-18 96.3 64 70.3
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 1.8e-18 95.5 65 72.3
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 1.8e-18 95.5 65 72.3
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.8e-18 95.5 64 71.9
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.3e-18 95.1 64 70.3
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.0e-18 94.7 64 68.8
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 3.0e-18 94.7 64 65.6
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.9e-18 94.4 64 71.9
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 6.7e-18 93.6 64 71.9
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.7e-18 93.6 64 68.8
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 6.7e-18 93.6 64 68.8
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 1.1e-17 92.8 67 62.7
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.5e-17 92.4 66 65.2
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.9e-17 92.0 68 69.1
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 3.3e-17 91.3 66 62.1
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 3.3e-17 91.3 64 70.3
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 3.3e-17 91.3 66 62.1
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 7.4e-17 90.1 66 62.1
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-16 89.4 68 67.6
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-16 89.4 68 67.6
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 2.2e-16 88.6 63 68.3
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.8e-16 88.2 68 66.2
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.8e-16 87.4 68 63.2
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 6.3e-16 87.0 66 63.6
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.3e-16 87.0 64 67.2
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 4.1e-15 84.3 64 64.1
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 9.0e-15 83.2 68 57.4
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.5e-14 82.4 65 58.5
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.5e-14 82.4 68 57.4
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 2.6e-14 81.6 68 57.4
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 2.6e-14 81.6 68 57.4
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 2.6e-14 81.6 68 57.4
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 2.6e-14 81.6 68 57.4
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.6e-14 81.6 65 64.6
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 4.5e-14 80.9 64 59.4
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 4.5e-14 80.9 64 59.4
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 7.7e-14 80.1 64 57.8
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 7.7e-14 80.1 64 57.8
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 1.3e-13 79.3 68 55.9
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 1.7e-13 79.0 64 57.8
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.7e-13 79.0 64 60.9
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 2.2e-13 78.6 61 59.0
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.9e-13 78.2 65 55.4
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.9e-13 78.2 65 55.4
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 2.9e-13 78.2 64 56.2
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 5.0e-13 77.4 68 54.4
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 5.0e-13 77.4 68 54.4
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 6.5e-13 77.0 68 63.2
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-12 75.9 68 52.9
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-12 75.9 68 52.9
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.4e-12 75.9 68 52.9
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 1.9e-12 75.5 61 55.7
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.9e-12 75.5 69 58.0
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.9e-12 75.5 62 64.5
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.5e-12 75.1 63 54.0
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 3.2e-12 74.7 62 61.3
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.2e-12 74.7 62 61.3
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 3.2e-12 74.7 69 55.1
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 4.2e-12 74.3 63 58.7
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.2e-12 74.3 61 62.3
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.2e-12 74.3 61 62.3
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.2e-12 73.6 62 61.3
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.2e-12 73.6 62 62.9
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.4e-12 73.2 69 58.0
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 9.4e-12 73.2 67 52.2
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.2e-11 72.8 62 58.1
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 2.7e-11 71.6 65 58.5
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.7e-11 71.6 71 53.5
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.7e-11 71.6 67 50.7
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 2.7e-11 71.6 62 59.7
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 3.6e-11 71.2 64 54.7
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 3.6e-11 71.2 62 62.9
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 3.6e-11 71.2 62 56.5
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 6.1e-11 70.5 57 63.2
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.1e-11 70.5 63 52.4
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.1e-11 70.5 63 52.4
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 7.9e-11 70.1 62 58.1
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.0e-10 69.7 57 63.2
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.0e-10 69.7 62 58.1
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.0e-10 69.7 51 66.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.0e-10 69.7 51 66.7
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.0e-10 69.7 56 62.5
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.4e-10 69.3 61 59.0
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.4e-10 69.3 61 59.0
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 1.8e-10 68.9 65 50.8
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.8e-10 68.9 51 66.7
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.8e-10 68.9 59 57.6
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.8e-10 68.9 50 70.0
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.8e-10 68.9 65 53.8
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 1.8e-10 68.9 72 55.6
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.3e-10 68.6 60 58.3
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 3.0e-10 68.2 51 64.7
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.0e-10 68.2 51 64.7
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.9e-10 67.8 57 61.4
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 3.9e-10 67.8 57 61.4
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 3.9e-10 67.8 62 58.1
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 5.1e-10 67.4 51 64.7
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.1e-09 66.2 61 54.1
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.5e-09 65.9 64 51.6
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.5e-09 65.9 57 57.9
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 2.5e-09 65.1 65 53.8
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 2.5e-09 65.1 65 52.3
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.3e-09 64.7 59 55.9
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 3.3e-09 64.7 62 56.5
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 5.7e-09 63.9 62 54.8
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.7e-09 63.9 57 54.4
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.4e-09 63.5 62 50.0
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.4e-09 63.5 62 50.0
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 2.8e-08 61.6 51 62.7
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 3.7e-08 61.2 62 46.8
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.7e-08 61.2 51 56.9
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.7e-08 61.2 51 56.9
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 4.8e-08 60.8 51 54.9
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.3e-08 60.5 57 54.4
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 1.1e-07 59.7 68 47.1
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-07 59.7 51 54.9
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-07 59.7 51 54.9
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 1.4e-07 59.3 65 50.8
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 1.8e-07 58.9 64 50.0
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 2.4e-07 58.5 52 55.8
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.1e-07 57.8 51 58.8
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 5.3e-07 57.4 62 48.4
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.9e-07 57.0 66 50.0
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.2e-06 56.2 51 54.9
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.5e-06 55.8 52 55.8
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 2.6e-06 55.1 50 52.0
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 2.6e-06 55.1 50 52.0
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.6e-06 55.1 52 55.8
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 2.6e-06 55.1 59 50.8
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 3.4e-06 54.7 39 74.4
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.4e-06 54.7 48 58.3
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.5e-06 54.3 50 52.0
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 5.9e-06 53.9 59 45.8


User provided reference genes

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