Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 2479.5 1273 100.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 2340.1 1273 94.0
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 2264.6 1278 91.2
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 2171.7 1252 88.3
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 2131.7 1273 85.4
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2115.1 1273 84.8
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2110.1 1294 83.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2098.9 1273 84.4
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1949.1 1254 78.9
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1945.6 1274 77.8
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1926.8 1271 78.0
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1891.7 1279 74.8
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1890.9 1279 74.9
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1890.5 1279 74.8
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1889.4 1252 77.2
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1885.5 1270 75.0
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1847.8 1254 75.7
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1847.0 1255 74.6
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1845.9 1275 74.3
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1839.3 1258 74.3
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1837.8 1257 74.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1831.2 1271 73.9
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1830.8 1258 73.7
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1828.1 1258 73.8
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1824.7 1272 72.8
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1821.6 1273 72.8
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1815.0 1278 73.2
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1814.3 1275 73.4
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1808.1 1265 73.1
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1803.9 1260 72.9
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1802.7 1276 72.1
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1801.6 1258 72.6
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1798.9 1281 72.4
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1796.6 1255 73.0
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1792.3 1325 70.3
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1790.4 1258 72.3
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1787.3 1276 72.3
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1785.8 1258 72.3
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1783.5 1254 71.9
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1783.1 1329 69.8
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1780.8 1258 71.9
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1779.2 1257 72.4
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1774.6 1262 70.7
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1770.4 1260 71.3
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1763.8 1281 70.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1762.7 1294 70.1
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1760.7 1284 72.0
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1755.3 1255 72.4
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1739.9 1314 69.4
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1738.4 1276 70.4
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1736.9 1274 69.8
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1731.1 1279 70.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1728.8 1274 69.8
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1727.6 1269 69.2
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1724.5 1252 69.6
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1722.2 1183 74.5
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1721.8 1265 70.0
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1719.9 1278 70.0
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1719.5 1323 68.0
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1718.7 1258 69.8
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1718.7 1263 70.5
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1718.0 1278 69.8
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1255 69.8
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1279 70.0
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1716.0 1275 70.0
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1714.1 1254 69.6
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1697.6 1319 66.9
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1697.2 1274 69.1
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1694.5 1263 69.0
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1693.7 1273 69.0
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1689.1 1274 69.4
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1688.3 1251 69.8
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1672.9 1276 68.0
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1672.1 1260 68.5
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1666.4 1254 68.6
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1655.2 1183 71.6
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1649.4 1270 67.2
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1270 67.2
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1646.3 1250 68.0
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1643.6 1188 71.8
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1643.6 1250 67.8
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1618.2 1262 66.1
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1610.9 1271 66.3
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1584.3 1209 68.1
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1583.2 1023 78.2
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1580.5 1188 68.4
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1580.5 1299 63.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1267 65.5
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1558.9 1009 77.4
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1515.4 1167 66.8
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1499.2 1261 61.4
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1494.2 1264 62.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1436.4 1274 60.4
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1436.0 1288 59.1
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1435.6 1253 59.6
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1336.6 1040 67.2
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1223.0 887 70.9
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1221.5 1256 54.8
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1176.0 968 62.1
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1166.0 888 68.7
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1157.5 955 64.3
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1135.6 1267 49.3
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1134.0 1264 49.1
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 0.0e+00 1086.2 679 80.7
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.5e-309 1065.8 792 68.7
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.1e-293 1013.8 816 64.8
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 8.4e-289 997.7 1196 47.1
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 5.1e-262 908.7 1236 43.9
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 5.0e-225 785.8 548 73.0
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 4.7e-223 779.2 1284 38.0
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 5.8e-197 692.6 621 59.9
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 4.0e-190 669.8 604 57.8
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 4.9e-188 662.9 488 70.1
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 4.7e-183 646.4 1412 33.9
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.0e-177 627.1 495 66.7
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.4e-174 617.5 1266 33.5
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.2e-157 562.0 675 49.2
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 3.8e-132 477.2 1151 31.8
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.7e-130 471.1 333 70.6
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 3.3e-128 464.2 703 43.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 7.4e-128 463.0 276 83.7
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 4.0e-105 387.5 248 79.8
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 4.2e-99 367.5 201 94.5
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.8e-97 360.1 272 68.8
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.8e-97 360.1 272 68.8
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.4e-96 357.5 337 55.2
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 5.9e-93 347.1 246 75.2
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.3e-75 287.7 242 61.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 2.0e-64 252.3 200 66.5
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 8.1e-58 230.3 161 73.9
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 1.8e-57 229.2 175 69.1
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.8e-47 194.9 161 62.7
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.8e-44 186.0 104 82.7
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 5.5e-38 164.5 122 68.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 5.1e-36 157.9 1212 22.8
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.5e-35 156.4 110 74.5
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.7e-31 142.9 121 65.3
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 2.7e-29 135.6 226 42.5
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.4e-20 106.7 95 57.9
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 8.8e-20 104.0 165 41.2
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.1e-19 103.6 115 47.8
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 5.7e-19 101.3 115 46.1
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 5.7e-19 101.3 130 41.5
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 2.8e-18 99.0 155 38.7
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.8e-18 99.0 62 82.3
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 5.5e-14 84.7 121 43.8
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.2e-13 83.6 91 53.8
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 4.7e-13 81.6 138 38.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 4.7e-13 81.6 106 41.5
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.0e-12 80.5 117 41.9
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.4e-12 80.1 62 67.7
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 7.0e-09 67.8 49 69.4
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 5.9e-08 64.7 47 66.0
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 7.7e-08 64.3 294 23.8
Manes.05G127200 Manihot esculenta HOM05D004478 ORTHO05D018907 1.3e-07 63.5 75 49.3
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 2.2e-07 62.8 57 57.9
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 8.5e-07 60.8 59 54.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.1e-06 60.5 31 77.4
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 2.5e-06 59.3 66 50.0
Gohir.A06G146601 Gossypium hirsutum HOM05D000669 ORTHO05D015433 7.2e-06 57.8 47 59.6
Gohir.A06G137902 Gossypium hirsutum HOM05D002560 ORTHO05D016211 9.4e-06 57.4 41 65.9


User provided reference genes

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