Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 1.4e-47 192.6 93 100.0
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 5.1e-18 94.4 131 42.7
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 3.1e-15 85.1 165 35.2
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 6.8e-15 84.0 82 58.5
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 3.4e-14 81.6 195 32.3
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 4.4e-14 81.3 171 32.2
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.3e-13 79.7 83 54.2
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 1.7e-13 79.3 74 56.8
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.7e-13 79.3 194 32.5
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 2.2e-13 79.0 80 55.0
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 2.2e-13 79.0 80 55.0
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 3.8e-13 78.2 80 53.8
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 3.8e-13 78.2 74 55.4
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 3.8e-13 78.2 186 30.6
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 4.9e-13 77.8 82 53.7
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 4.9e-13 77.8 183 31.1
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 6.4e-13 77.4 82 51.2
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 8.4e-13 77.0 82 51.2
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.1e-12 76.6 83 50.6
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.1e-12 76.6 83 50.6
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.1e-12 76.6 83 50.6
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.4e-12 76.3 77 54.5
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 1.4e-12 76.3 82 51.2
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 1.9e-12 75.9 202 30.7
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.9e-12 75.9 73 53.4
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.9e-12 75.9 80 52.5
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 2.4e-12 75.5 82 51.2
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 2.4e-12 75.5 82 52.4
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.2e-12 75.1 109 42.2
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 3.2e-12 75.1 80 53.8
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 4.2e-12 74.7 108 43.5
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 4.2e-12 74.7 73 52.1
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 4.2e-12 74.7 72 54.2
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 4.2e-12 74.7 74 55.4
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 4.2e-12 74.7 110 45.5
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 5.4e-12 74.3 110 44.5
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 5.4e-12 74.3 110 40.0
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 5.4e-12 74.3 88 47.7
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 7.1e-12 73.9 175 29.1
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 9.3e-12 73.6 74 52.7
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 9.3e-12 73.6 110 44.5
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.2e-11 73.2 96 45.8
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 1.2e-11 73.2 96 45.8
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.6e-11 72.8 74 50.0
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 2.1e-11 72.4 195 29.2
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.1e-11 72.4 74 50.0
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 2.7e-11 72.0 74 48.6
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 3.5e-11 71.6 78 48.7
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 3.5e-11 71.6 82 46.3
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 4.6e-11 71.2 74 51.4
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 4.6e-11 71.2 74 50.0
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 4.6e-11 71.2 74 51.4
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 4.6e-11 71.2 82 46.3
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 6.0e-11 70.9 82 47.6
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 6.0e-11 70.9 72 51.4
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 7.8e-11 70.5 73 49.3
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 7.8e-11 70.5 107 43.0
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 7.8e-11 70.5 201 27.9
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 7.8e-11 70.5 80 47.5
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.0e-10 70.1 74 51.4
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 1.0e-10 70.1 110 42.7
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.3e-10 69.7 107 41.1
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 1.7e-10 69.3 73 47.9
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.7e-10 69.3 71 50.7
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.7e-10 69.3 74 51.4
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 2.3e-10 68.9 80 45.0
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 2.3e-10 68.9 73 47.9
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.3e-10 68.9 72 50.0
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 3.0e-10 68.6 74 48.6
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 3.0e-10 68.6 72 50.0
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 3.0e-10 68.6 80 47.5
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 3.0e-10 68.6 80 47.5
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 3.0e-10 68.6 74 50.0
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 3.9e-10 68.2 107 40.2
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 3.9e-10 68.2 94 42.6
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 5.1e-10 67.8 134 35.1
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 5.1e-10 67.8 74 47.3
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 5.1e-10 67.8 74 50.0
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 5.1e-10 67.8 73 49.3
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.6e-10 67.4 82 45.1
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 6.6e-10 67.4 74 45.9
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 8.7e-10 67.0 73 46.6
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 8.7e-10 67.0 83 44.6
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 1.1e-09 66.6 83 43.4
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.1e-09 66.6 80 42.5
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.1e-09 66.6 82 45.1
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 1.1e-09 66.6 73 46.6
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.5e-09 66.2 82 43.9
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 1.5e-09 66.2 82 41.5
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 1.5e-09 66.2 73 46.6
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.9e-09 65.9 92 40.2
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.9e-09 65.9 72 45.8
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 1.9e-09 65.9 74 45.9
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 2.5e-09 65.5 71 46.5
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.3e-09 65.1 74 43.2
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.3e-09 65.1 74 43.2
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 4.3e-09 64.7 73 45.2
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 4.3e-09 64.7 73 45.2
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 7.3e-09 63.9 73 43.8
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 7.3e-09 63.9 73 43.8
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 7.3e-09 63.9 74 41.9
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 7.3e-09 63.9 74 41.9
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 7.3e-09 63.9 74 41.9
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 9.6e-09 63.5 74 43.2
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 1.6e-08 62.8 73 43.8
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 1.6e-08 62.8 73 43.8
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 1.6e-08 62.8 74 41.9
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.6e-08 62.8 74 45.9
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 2.1e-08 62.4 71 42.3
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 3.6e-08 61.6 73 41.1
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 8.1e-08 60.5 82 39.0
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.1e-07 60.1 73 42.5
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.1e-07 60.1 73 42.5
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.5e-06 56.2 73 41.1
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 7.6e-06 53.9 49 53.1


User provided reference genes

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