Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 4.7e-167 591.3 334 100.0
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.4e-126 456.8 295 84.1
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.0e-116 424.1 295 79.0
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.9e-116 422.5 295 78.6
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.2e-115 419.1 295 78.0
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 9.4e-115 417.5 295 77.6
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.7e-114 416.0 295 77.6
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.8e-110 403.3 299 74.6
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 1.6e-109 400.2 296 74.7
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 2.1e-106 389.8 295 73.6
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 4.0e-105 385.6 296 74.3
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 4.0e-105 385.6 295 72.9
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 3.3e-104 382.5 295 72.2
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 9.7e-104 380.9 295 71.2
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 2.2e-103 379.8 295 71.5
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 4.1e-102 375.6 295 70.5
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 5.3e-102 375.2 295 72.2
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.6e-101 373.6 295 70.5
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 2.7e-101 372.9 298 71.8
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 2.7e-101 372.9 295 71.2
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 3.8e-100 369.0 295 71.2
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 4.2e-99 365.5 295 69.2
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.6e-98 363.6 297 69.4
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 3.6e-98 362.5 295 69.8
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 3.6e-98 362.5 295 68.5
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 4.7e-98 362.1 303 70.6
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 8.0e-98 361.3 295 68.1
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 1.0e-97 360.9 295 69.2
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.3e-97 359.8 299 68.9
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 4.0e-97 359.0 296 69.3
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 6.8e-97 358.2 295 71.9
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.5e-96 357.1 295 67.5
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 3.4e-96 355.9 289 69.6
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 4.4e-96 355.5 295 68.5
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 9.8e-96 354.4 296 67.6
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.7e-95 353.6 297 70.7
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.8e-95 352.8 296 67.9
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 2.8e-95 352.8 295 68.8
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 3.7e-95 352.4 300 69.0
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 6.3e-95 351.7 295 67.8
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.8e-94 350.1 295 67.8
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 1.8e-94 350.1 311 68.8
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 1.2e-93 347.4 319 65.8
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 2.7e-93 346.3 358 61.5
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 4.5e-93 345.5 295 66.8
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 1.3e-92 344.0 313 63.6
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 2.5e-91 339.7 275 69.5
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.6e-90 337.0 284 65.5
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.6e-90 337.0 290 69.0
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 2.1e-90 336.7 296 64.9
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 4.7e-90 335.5 261 70.9
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 6.1e-90 335.1 295 64.4
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 4.0e-89 332.4 296 64.5
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 4.0e-89 332.4 295 68.8
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 4.0e-89 332.4 295 65.4
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 8.8e-89 331.3 296 64.2
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.5e-88 330.5 297 64.6
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.5e-88 330.5 295 63.7
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.5e-88 330.5 330 58.8
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.0e-88 330.1 326 60.1
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 5.7e-88 328.6 295 63.4
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 7.5e-88 328.2 303 63.7
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 7.5e-88 328.2 296 63.9
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 9.8e-88 327.8 297 64.3
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.7e-87 327.0 299 64.2
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 2.8e-87 326.2 297 64.3
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 3.7e-87 325.9 319 60.5
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 1.1e-86 324.3 298 64.1
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 1.1e-86 324.3 298 64.1
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.4e-86 323.2 305 62.6
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 2.4e-86 323.2 295 63.4
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 3.1e-86 322.8 298 63.8
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.1e-86 322.8 268 67.5
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 4.1e-86 322.4 296 63.5
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.6e-85 320.5 296 62.2
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.6e-85 320.5 297 63.0
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.5e-85 319.3 297 61.6
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.7e-84 317.0 295 62.4
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.3e-84 316.6 295 62.4
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 1.5e-83 313.9 279 64.2
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 7.3e-83 311.6 295 61.7
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.3e-81 306.6 303 60.4
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 5.2e-81 305.4 296 60.5
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.2e-80 304.3 295 61.4
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.0e-80 303.5 294 60.2
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 1.3e-79 300.8 294 59.5
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 8.3e-79 298.1 385 49.1
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.8e-78 297.0 387 49.6
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 2.4e-78 296.6 301 57.8
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 3.2e-78 296.2 266 61.3
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.2e-78 296.2 215 76.3
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 5.4e-78 295.4 293 61.1
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 7.0e-78 295.0 260 62.7
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 5.9e-77 292.0 297 59.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 7.8e-77 291.6 295 60.0
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 3.0e-76 289.7 300 61.7
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 2.5e-75 286.6 347 53.3
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 5.6e-75 285.4 261 62.5
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 2.1e-74 283.5 300 56.0
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.6e-74 282.7 253 62.5
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.8e-73 280.4 296 57.1
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 3.7e-71 272.7 299 56.2
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 5.0e-68 262.3 297 54.5
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.3e-65 253.4 197 72.6
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 3.1e-65 253.1 241 61.0
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.2e-64 251.1 221 63.8
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.4e-62 244.2 252 54.4
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 4.1e-62 242.7 292 53.8
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 4.7e-58 229.2 234 60.3
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 1.4e-57 227.6 182 70.3
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 9.9e-56 221.5 307 50.8
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 8.6e-52 208.4 176 65.9
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.9e-46 190.7 268 42.9
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 9.3e-46 188.3 183 59.0
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 6.0e-45 185.7 183 62.8
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.3e-43 179.9 240 42.5
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.3e-43 179.5 240 42.5
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 2.8e-42 176.8 283 43.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.4e-41 173.7 130 74.6
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.9e-38 164.1 178 57.9
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 4.2e-38 162.9 230 40.9
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 3.9e-36 156.4 122 69.7
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 5.6e-35 152.5 118 69.5
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.3e-34 151.4 239 36.8
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 5.3e-33 146.0 232 40.9
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.2e-32 144.8 118 65.3
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 5.5e-30 136.0 165 51.5
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 1.6e-26 124.4 130 54.6
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.5e-24 117.9 235 34.9
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.4e-22 111.3 80 78.8
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 5.5e-22 109.4 121 52.1
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 9.3e-22 108.6 97 60.8
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 1.6e-21 107.8 177 43.5
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 7.4e-19 99.0 108 54.6
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 2.1e-18 97.4 108 53.7
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 1.1e-17 95.1 108 53.7
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 7.9e-13 79.0 63 63.5
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 3.7e-10 70.1 182 28.0
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.2e-08 65.1 47 66.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.2e-08 65.1 47 66.0
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 1.2e-08 65.1 47 66.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.2e-08 65.1 47 66.0
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 6.5e-07 59.3 173 31.8


User provided reference genes

Program Settings