Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1224900 Malus domestica HOM05D000115 ORTHO05D003511 1.8e-27 125.2 61 100.0
MD02G1108000 Malus domestica HOM05D000115 ORTHO05D003511 3.7e-17 90.9 52 75.0
MD15G1227500 Malus domestica HOM05D000115 ORTHO05D003511 3.7e-17 90.9 52 75.0
MD13G1054400 Malus domestica HOM05D000115 ORTHO05D003511 1.1e-16 89.4 44 86.4
Manes.02G117100 Manihot esculenta HOM05D000115 ORTHO05D003511 1.1e-16 89.4 52 73.1
Potri.011G145300 Populus trichocarpa HOM05D000115 ORTHO05D003511 1.1e-16 89.4 52 73.1
Sabra11G0130400 Salix brachista HOM05D000115 ORTHO05D003511 1.1e-16 89.4 52 73.1
MD06G1225000 Malus domestica HOM05D000115 ORTHO05D003511 3.1e-16 87.8 45 91.1
Potri.001G456600 Populus trichocarpa HOM05D000115 ORTHO05D003511 3.1e-16 87.8 52 71.2
Thecc.01G001600 Theobroma cacao HOM05D000115 ORTHO05D003511 3.1e-16 87.8 52 71.2
Ciclev10025593m.g Citrus clementina HOM05D000115 ORTHO05D003511 4.1e-16 87.4 52 71.2
CiPaw.13G128300 Carya illinoinensis HOM05D000115 ORTHO05D003511 5.3e-16 87.0 52 71.2
arahy.Tifrunner.gnm1.ann1.5JAI4A Arachis hypogaea HOM05D000115 ORTHO05D003511 6.9e-16 86.7 52 67.3
CSS0040979 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D003511 6.9e-16 86.7 52 69.2
CSS0043751 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D003511 6.9e-16 86.7 52 69.2
Ca_22445_v3 Cicer arietinum L. HOM05D000115 ORTHO05D003511 6.9e-16 86.7 52 65.4
Dinv40223 Davidia involucrata HOM05D000534 ORTHO05D003511 6.9e-16 86.7 52 69.2
Duzib147G0660 Durio zibethinus HOM05D000115 ORTHO05D003511 6.9e-16 86.7 52 69.2
Medtr8g072600 Medicago truncatula HOM05D000115 ORTHO05D003511 9.0e-16 86.3 52 65.4
Glyma.09G195800 Glycine max HOM05D000115 ORTHO05D003511 1.2e-15 85.9 52 65.4
Glyma.16G114700 Glycine max HOM05D000115 ORTHO05D003511 1.2e-15 85.9 52 65.4
Phvul.003G272100 Phaseolus vulgaris HOM05D000115 ORTHO05D003511 1.2e-15 85.9 52 65.4
CsaV3_3G000120 Cucumis sativus L. HOM05D000115 ORTHO05D003511 2.0e-15 85.1 52 67.3
Peaxi162Scf00981g00421 Petunia axillaris HOM05D000115 ORTHO05D003511 2.0e-15 85.1 52 67.3
Psat4g107160 Pisum sativum HOM05D000115 ORTHO05D003511 2.0e-15 85.1 52 65.4
SHI21148 Sapria himalayana HOM05D000115 ORTHO05D003511 2.0e-15 85.1 52 69.2
Sed0022104 Sechium edule HOM05D000115 ORTHO05D003511 2.0e-15 85.1 52 67.3
TWI53G0283 Tripterygium wilfordii HOM05D000115 ORTHO05D003511 2.0e-15 85.1 52 71.2
ClCG10G000100 Citrullus lanatus HOM05D000115 ORTHO05D003511 2.6e-15 84.7 52 67.3
Gohir.A07G172400 Gossypium hirsutum HOM05D000115 ORTHO05D003511 2.6e-15 84.7 52 69.2
Gohir.D07G179200 Gossypium hirsutum HOM05D000115 ORTHO05D003511 2.6e-15 84.7 52 69.2
Gorai.001G200300 Gossypium raimondii HOM05D000115 ORTHO05D003511 2.6e-15 84.7 52 69.2
MD06G1202700 Malus domestica HOM05D000115 ORTHO05D003511 2.6e-15 84.7 45 84.4
Prupe.7G187800 Prunus persica HOM05D000115 ORTHO05D003511 2.6e-15 84.7 52 67.3
QL01p019305 Quercus lobata HOM05D000115 ORTHO05D003511 2.6e-15 84.7 52 67.3
QL09p001102 Quercus lobata HOM05D000030 ORTHO05D003511 2.6e-15 84.7 52 69.2
Haze_23581 Corylus avellana HOM05D000115 ORTHO05D003511 3.4e-15 84.3 52 65.4
DCAR_014123 Daucus carota HOM05D000115 ORTHO05D003511 3.4e-15 84.3 52 69.2
LjContig00247g0006698 Lotus japonicus HOM05D000115 ORTHO05D003511 3.4e-15 84.3 44 72.7
PGR102G0720 Punica granatum HOM05D000115 ORTHO05D003511 3.4e-15 84.3 52 65.4
SEGI_41226 Sequoiadendron giganteum HOM05D000115 ORTHO05D003511 3.4e-15 84.3 52 65.4
TPR.G35829 Trifolium pratense HOM05D000115 ORTHO05D003511 3.4e-15 84.3 52 63.5
Aa31LG1G18030 Aethionema arabicum HOM05D000115 ORTHO05D003511 4.5e-15 84.0 52 69.2
GSVIVG01026440001 Vitis vinifera HOM05D000835 ORTHO05D007655 4.5e-15 84.0 52 65.4
MELO3C013705.2 Cucumis melo HOM05D000115 ORTHO05D003511 5.9e-15 83.6 52 65.4
Prupe.2G305700 Prunus persica HOM05D000115 ORTHO05D003511 5.9e-15 83.6 52 69.2
Rhsim10G0191000 Rhododendron simsii HOM05D000115 ORTHO05D003511 5.9e-15 83.6 52 67.3
CDE07G1148 Ceratophyllum demersum HOM05D000115 ORTHO05D003511 7.7e-15 83.2 52 67.3
Lsat_1_v5_gn_2_73121 Lactuca sativa HOM05D000115 ORTHO05D003511 7.7e-15 83.2 54 68.5
Lalb_Chr05g0229471 Lupinus albus HOM05D000115 ORTHO05D003511 7.7e-15 83.2 44 72.7
Nitab4.5_0000855g0170 Nicotiana tabacum HOM05D000115 ORTHO05D003511 7.7e-15 83.2 52 65.4
THA.LOC104826459 Tarenaya hassleriana HOM05D000115 ORTHO05D003511 7.7e-15 83.2 52 65.4
CARHR277770 Cardamine hirsuta HOM05D000115 ORTHO05D003511 1.0e-14 82.8 52 65.4
Cpa.g.sc6.351 Carica papaya HOM05D000115 ORTHO05D003511 1.0e-14 82.8 52 67.3
Migut.K01156 Erythranthe guttata HOM05D000115 ORTHO05D003511 1.0e-14 82.8 52 65.4
Eucgr.J02567 Eucalyptus grandis HOM05D000115 ORTHO05D003511 1.0e-14 82.8 52 63.5
Prupe.5G201300 Prunus persica HOM05D000115 ORTHO05D003511 1.0e-14 82.8 52 67.3
AL697U10020 Arabidopsis lyrata HOM05D000115 ORTHO05D003511 1.3e-14 82.4 52 65.4
AL8G41100 Arabidopsis lyrata HOM05D000115 ORTHO05D003511 1.3e-14 82.4 52 65.4
AT5G63870 Arabidopsis thaliana HOM05D000115 ORTHO05D003511 1.3e-14 82.4 52 65.4
Carub.0008s2464 Capsella rubella HOM05D000115 ORTHO05D003511 1.3e-14 82.4 52 65.4
Thhalv10004310m.g Eutrema salsugineum HOM05D000115 ORTHO05D003511 1.3e-14 82.4 52 65.4
Nitab4.5_0003141g0070 Nicotiana tabacum HOM05D000115 ORTHO05D003511 1.3e-14 82.4 52 65.4
Sc16g0004370 Simmondsia chinensis HOM05D000115 ORTHO05D003511 1.3e-14 82.4 52 61.5
CAN.G809.3 Capsicum annuum HOM05D000115 ORTHO05D003511 1.7e-14 82.0 51 66.7
Oeu045755.1 Olea europaea HOM05D000115 ORTHO05D003511 1.7e-14 82.0 52 65.4
Sp2g26930 Schrenkiella parvula HOM05D000115 ORTHO05D003511 1.7e-14 82.0 52 65.4
Solyc02g082230.4 Solanum lycopersicum HOM05D000115 ORTHO05D003511 1.7e-14 82.0 51 66.7
Sopen02g026890 Solanum pennellii HOM05D000115 ORTHO05D003511 1.7e-14 82.0 51 66.7
PGSC0003DMG400013661 Solanum tuberosum HOM05D000115 ORTHO05D003511 1.7e-14 82.0 51 66.7
TAR376G0183 Trochodendron aralioides HOM05D000115 ORTHO05D003511 1.7e-14 82.0 52 63.5
Actinidia22860 Actinidia chinensis HOM05D000115 ORTHO05D003511 2.2e-14 81.6 52 65.4
MBI01_g22972_MAGBIO Magnolia biondii HOM05D000115 ORTHO05D003511 2.2e-14 81.6 52 65.4
Prupe.5G202500 Prunus persica HOM05D000115 ORTHO05D003511 2.2e-14 81.6 52 67.3
Prupe.5G202600 Prunus persica HOM05D000115 ORTHO05D003511 2.2e-14 81.6 52 67.3
A09p08440 Brassica napus HOM05D000115 ORTHO05D003511 2.9e-14 81.3 52 63.5
BraA09t36494Z Brassica rapa HOM05D000115 ORTHO05D003511 2.9e-14 81.3 52 63.5
AUR62003714 Chenopodium quinoa HOM05D000115 ORTHO05D003511 2.9e-14 81.3 52 61.5
HanXRQChr10g0316191 Helianthus annuus HOM05D000115 ORTHO05D003511 2.9e-14 81.3 54 66.7
Nn6g31606 Nelumbo nucifera HOM05D000115 ORTHO05D003511 2.9e-14 81.3 52 61.5
Atru.chr3.62 Acer truncatum HOM05D000115 ORTHO05D003511 3.8e-14 80.9 52 65.4
BcaC04g23350 Brassica carinata HOM05D000115 ORTHO05D003511 3.8e-14 80.9 52 63.5
BcaNung04638 Brassica carinata HOM05D000115 ORTHO05D003511 3.8e-14 80.9 52 63.5
C09p09550 Brassica napus HOM05D000115 ORTHO05D003511 3.8e-14 80.9 52 63.5
BolC9t53866H Brassica oleracea HOM05D000115 ORTHO05D003511 3.8e-14 80.9 52 63.5
Hund03578 Selenicereus undatus HOM05D000115 ORTHO05D003511 3.8e-14 80.9 52 61.5
PSO017G4389 Papaver somniferum HOM05D000115 ORTHO05D003511 5.0e-14 80.5 52 63.5
PSO170G6490 Papaver somniferum HOM05D000115 ORTHO05D003511 5.0e-14 80.5 52 63.5
QL09p003987 Quercus lobata HOM05D000176 ORTHO05D003511 5.0e-14 80.5 52 65.4
ECA238G1247 Erigeron canadensis HOM05D000115 ORTHO05D003511 6.5e-14 80.1 54 66.7
Sabra16G0308900 Salix brachista HOM05D000115 ORTHO05D003511 6.5e-14 80.1 42 81.0
Peaxi162Scf00038g02647 Petunia axillaris HOM05D000115 ORTHO05D003511 8.5e-14 79.7 52 65.4
ATR0605G387 Amborella trichopoda HOM05D000115 ORTHO05D003511 1.1e-13 79.3 52 63.5
Aqoxy6G03027 Aquilegia oxysepala HOM05D000115 ORTHO05D003511 1.1e-13 79.3 52 61.5
COL.COLO4_22569 Corchorus olitorius HOM05D000115 ORTHO05D003511 1.1e-13 79.3 42 76.2
FvH4_1g09700 Fragaria vesca HOM05D000115 ORTHO05D003511 1.1e-13 79.3 56 60.7
EL10Ac6g14705 Beta vulgaris HOM05D000115 ORTHO05D003511 1.4e-13 79.0 52 59.6
Cc07_g12260 Coffea canephora HOM05D000115 ORTHO05D003511 1.4e-13 79.0 52 65.4
SGA_v2.0_scaffold132G34571 Striga asiatica HOM05D000115 ORTHO05D003511 1.4e-13 79.0 52 63.5
HPP92_015729 Vanilla planifolia HOM05D000115 ORTHO05D003511 1.4e-13 79.0 43 74.4
HanXRQChr02g0055091 Helianthus annuus HOM05D000115 ORTHO05D003511 2.5e-13 78.2 54 63.0
Ah.02g123230 Amaranthus hybridus HOM05D000115 ORTHO05D003511 3.2e-13 77.8 52 57.7
RcHm_v2.0_Chr2g0096721 Rosa chinensis HOM05D000115 ORTHO05D003511 3.2e-13 77.8 39 84.6
Aa31LG10G5620 Aethionema arabicum HOM05D000176 ORTHO05D003511 5.5e-13 77.0 51 62.7
SMO331G0044 Selaginella moellendorffii HOM05D000115 ORTHO05D003511 5.5e-13 77.0 52 59.6
arahy.Tifrunner.gnm1.ann1.Q538IK Arachis hypogaea HOM05D000115 ORTHO05D003511 7.2e-13 76.6 67 52.2
THA.LOC104802612 Tarenaya hassleriana HOM05D000176 ORTHO05D003511 7.2e-13 76.6 51 64.7
Atru.chr3.76 Acer truncatum HOM05D000115 ORTHO05D003511 1.2e-12 75.9 43 72.1
vmacro20274 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 1.2e-12 75.9 52 59.6
Zm00001eb035360 Zea mays HOM05D000115 ORTHO05D003511 1.6e-12 75.5 51 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4561 Anthoceros agrestis HOM05D000115 ORTHO05D003511 2.1e-12 75.1 52 57.7
Cfa010194 Carpinus fangiana HOM05D000115 ORTHO05D003511 2.7e-12 74.7 46 65.2
SMO331G0051 Selaginella moellendorffii HOM05D000115 ORTHO05D003511 3.6e-12 74.3 52 57.7
Thhalv10011184m.g Eutrema salsugineum HOM05D000176 ORTHO05D003511 4.6e-12 73.9 51 60.8
Rhsim10G0079000 Rhododendron simsii HOM05D000176 ORTHO05D003511 4.6e-12 73.9 52 61.5
RcHm_v2.0_Chr4g0402221 Rosa chinensis HOM05D000115 ORTHO05D003511 4.6e-12 73.9 39 82.1
CANSAT56G4126 Cannabis sativa HOM05D000115 ORTHO05D003511 6.1e-12 73.6 49 61.2
Mapoly0002s0045 Marchantia polymorpha HOM05D000115 ORTHO05D003511 6.1e-12 73.6 51 54.9
A06p04680 Brassica napus HOM05D000176 ORTHO05D003511 1.0e-11 72.8 51 58.8
C06p02530 Brassica napus HOM05D000176 ORTHO05D003511 1.0e-11 72.8 51 58.8
BolC6t35381H Brassica oleracea HOM05D000176 ORTHO05D003511 1.0e-11 72.8 51 58.8
BraA06t23671Z Brassica rapa HOM05D000176 ORTHO05D003511 1.0e-11 72.8 51 58.8
CARHR037760 Cardamine hirsuta HOM05D000176 ORTHO05D003511 1.8e-11 72.0 51 58.8
MELO3C021657.2 Cucumis melo HOM05D000115 ORTHO05D003511 1.8e-11 72.0 43 65.1
Oeu043410.3 Olea europaea HOM05D000115 ORTHO05D003511 1.8e-11 72.0 70 48.6
Sp1g35090 Schrenkiella parvula HOM05D000176 ORTHO05D003511 1.8e-11 72.0 51 56.9
Sopen12g002060 Solanum pennellii HOM05D000176 ORTHO05D003511 1.8e-11 72.0 44 65.9
AL1G54690 Arabidopsis lyrata HOM05D000176 ORTHO05D003511 2.3e-11 71.6 51 58.8
Carub.0001s3722 Capsella rubella HOM05D000176 ORTHO05D003511 2.3e-11 71.6 51 58.8
FvH4_1g09940 Fragaria vesca HOM05D000115 ORTHO05D003511 2.3e-11 71.6 42 69.0
FAN19G3058 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.3e-11 71.6 42 69.0
FAN23G0607 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.3e-11 71.6 42 69.0
FAN23G1295 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.3e-11 71.6 42 69.0
FAN26G1982 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.3e-11 71.6 42 69.0
FAN28G0496 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.3e-11 71.6 42 69.0
Solyc12g006100.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.3e-11 71.6 44 63.6
Glyma.13G348300 Glycine max HOM05D000115 ORTHO05D003511 3.0e-11 71.2 42 69.0
AUR62018026 Chenopodium quinoa HOM05D000115 ORTHO05D003511 3.9e-11 70.9 47 57.4
Pp3c22_17230 Physcomitrium patens HOM05D000115 ORTHO05D003511 3.9e-11 70.9 51 51.0
vmacro11356 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 3.9e-11 70.9 51 64.7
VMungo1080G1576 Vigna mungo HOM05D000115 ORTHO05D003511 3.9e-11 70.9 43 65.1
AT1G48120 Arabidopsis thaliana HOM05D000176 ORTHO05D003511 5.1e-11 70.5 51 58.8
CsaV3_5G026460 Cucumis sativus L. HOM05D000115 ORTHO05D003511 5.1e-11 70.5 43 65.1
FvH4_6g33720 Fragaria vesca HOM05D000115 ORTHO05D003511 5.1e-11 70.5 51 56.9
C03p62570 Brassica napus HOM05D000115 ORTHO05D003511 6.7e-11 70.1 46 63.0
Haze_15977 Corylus avellana HOM05D000115 ORTHO05D003511 6.7e-11 70.1 56 53.6
Pp3c15_19370 Physcomitrium patens HOM05D000115 ORTHO05D003511 6.7e-11 70.1 51 52.9
Pp3c9_19490 Physcomitrium patens HOM05D000115 ORTHO05D003511 6.7e-11 70.1 51 52.9
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 6.7e-11 70.1 55 54.5
ClCG09G019990 Citrullus lanatus HOM05D000115 ORTHO05D003511 8.8e-11 69.7 43 65.1
FAN02G0337 Fragaria x ananassa HOM05D000115 ORTHO05D003511 8.8e-11 69.7 43 65.1
FAN05G4063 Fragaria x ananassa HOM05D000115 ORTHO05D003511 8.8e-11 69.7 43 65.1
FAN09G3652 Fragaria x ananassa HOM05D000115 ORTHO05D003511 8.8e-11 69.7 43 65.1
RcHm_v2.0_Chr2g0143611 Rosa chinensis HOM05D000115 ORTHO05D003511 8.8e-11 69.7 43 62.8
Actinidia17142 Actinidia chinensis HOM05D000115 ORTHO05D003511 1.1e-10 69.3 50 58.0
Glyma.15G025732 Glycine max HOM05D000115 ORTHO05D003511 1.1e-10 69.3 43 65.1
MD09G1191500 Malus domestica HOM05D000115 ORTHO05D003511 1.5e-10 68.9 43 67.4
Ca_01214_v3 Cicer arietinum L. HOM05D000115 ORTHO05D003511 2.0e-10 68.6 42 64.3
Sed0000024 Sechium edule HOM05D000115 ORTHO05D003511 2.0e-10 68.6 52 55.8
Lj3g0016356 Lotus japonicus HOM05D000115 ORTHO05D003511 2.6e-10 68.2 43 60.5
CiPaw.02G139100 Carya illinoinensis HOM05D000115 ORTHO05D003511 3.3e-10 67.8 43 65.1
Prupe.3G047600 Prunus persica HOM05D000115 ORTHO05D003511 3.3e-10 67.8 43 65.1
Psat5g291480 Pisum sativum HOM05D000115 ORTHO05D003511 4.4e-10 67.4 42 64.3
QL05p010459 Quercus lobata HOM05D000115 ORTHO05D003511 4.4e-10 67.4 43 65.1
BcaC01g02638 Brassica carinata HOM05D000115 ORTHO05D003511 7.4e-10 66.6 48 62.5
CANSAT56G1622 Cannabis sativa HOM05D000115 ORTHO05D003511 7.4e-10 66.6 51 51.0
Rhsim12G0012700 Rhododendron simsii HOM05D000115 ORTHO05D003511 7.4e-10 66.6 43 62.8
unitig_0.g2634 Utricularia gibba HOM05D000115 ORTHO05D003511 7.4e-10 66.6 54 63.0
Os08g0513000 Oryza sativa ssp. japonica HOM05D000115 ORTHO05D003511 9.7e-10 66.2 34 79.4
PGSC0003DMG400007884 Solanum tuberosum HOM05D000115 ORTHO05D003511 1.3e-09 65.9 44 61.4
Cc03_g15950 Coffea canephora HOM05D000176 ORTHO05D003511 2.8e-09 64.7 44 59.1
Lj4A243G58 Lonicera japonica HOM05D000115 ORTHO05D003511 2.8e-09 64.7 62 51.6
arahy.Tifrunner.gnm1.ann1.FAWA0L Arachis hypogaea HOM05D000115 ORTHO05D003511 6.3e-09 63.5 58 46.6
arahy.Tifrunner.gnm1.ann1.G5TW2N Arachis hypogaea HOM05D000115 ORTHO05D003511 6.3e-09 63.5 58 46.6
Eucgr.F03141 Eucalyptus grandis HOM05D000115 ORTHO05D003511 6.3e-09 63.5 54 51.9
Medtr2g099710 Medicago truncatula HOM05D000115 ORTHO05D003511 1.1e-08 62.8 52 50.0
CBR_g58154 Chara braunii HOM05D000115 ORTHO05D003511 1.4e-08 62.4 54 44.4
Ciclev10025179m.g Citrus clementina HOM05D000115 ORTHO05D003511 1.8e-08 62.0 44 59.1
MCO16G232 Micromonas commoda HOM05D000115 ORTHO05D003511 1.2e-07 59.3 44 52.3
Cre12.g500350 Chlamydomonas reinhardtii HOM05D000115 ORTHO05D003511 4.5e-07 57.4 46 52.2
Sabra01G0143300 Salix brachista HOM05D000115 ORTHO05D050563 5.9e-07 57.0 51 51.0
CsaV3_UNG153160 Cucumis sativus L. HOM05D000115 ORTHO05D003511 1.7e-06 55.5 33 66.7
Potri.001G196600 Populus trichocarpa HOM05D000115 ORTHO05D050563 1.7e-06 55.5 51 49.0
PRCOL_00004015 Prasinoderma coloniale HOM05D000115 ORTHO05D003511 3.8e-06 54.3 57 42.1


User provided reference genes

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