Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1348.2 676 100.0
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1275.8 676 93.8
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 0.0e+00 1161.4 679 85.3
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 0.0e+00 1146.7 679 85.1
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1144.4 679 85.0
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1131.3 693 82.5
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1127.5 681 84.3
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1121.7 688 82.6
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 0.0e+00 1108.2 693 79.8
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 0.0e+00 1082.8 679 79.8
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 2.7e-310 1068.1 679 78.9
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 7.8e-310 1066.6 679 78.2
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 1.7e-309 1065.4 664 78.9
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.9e-308 1062.0 679 77.8
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 1.9e-308 1062.0 675 78.2
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.2e-307 1059.3 679 77.5
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 2.3e-306 1055.0 689 77.2
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 2.3e-306 1055.0 673 78.3
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.1e-306 1054.7 677 77.0
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.1e-306 1054.7 678 77.0
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 9.9e-305 1049.7 670 78.7
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 6.4e-304 1047.0 677 77.1
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 3.2e-303 1044.6 670 78.5
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 1.3e-301 1039.3 677 77.7
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 3.0e-301 1038.1 675 75.3
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 5.1e-301 1037.3 670 78.4
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 6.6e-301 1036.9 651 79.1
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 3.3e-300 1034.6 677 77.1
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 9.5e-300 1033.1 677 75.9
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 4.0e-298 1027.7 617 82.0
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 8.9e-298 1026.5 678 75.8
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.5e-297 1025.8 649 78.6
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.5e-297 1025.8 676 75.3
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 2.6e-297 1025.0 678 75.4
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 3.4e-297 1024.6 679 76.0
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 4.4e-297 1024.2 678 75.2
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 6.4e-296 1020.4 670 76.6
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 7.1e-295 1016.9 656 76.1
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.1e-294 1015.4 600 82.8
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 2.3e-293 1011.9 666 75.1
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 3.0e-293 1011.5 543 92.1
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 3.9e-293 1011.1 603 82.6
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 8.7e-293 1010.0 678 74.0
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 2.1e-291 1005.4 660 74.7
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 2.8e-291 1005.0 676 73.8
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 3.1e-290 1001.5 652 76.4
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 2.6e-289 998.4 659 74.4
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 4.4e-289 997.7 601 82.2
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 1.4e-287 992.6 679 73.8
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 7.3e-284 980.3 655 74.8
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 2.1e-283 978.8 652 74.1
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 3.6e-283 978.0 654 74.3
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.8e-282 975.7 651 74.0
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 5.3e-282 974.2 654 74.2
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 2.6e-281 971.8 672 72.6
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 5.8e-281 970.7 655 73.6
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 5.8e-281 970.7 676 72.9
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 2.9e-280 968.4 654 72.8
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 3.8e-280 968.0 652 72.9
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 4.9e-280 967.6 650 73.8
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 6.4e-280 967.2 651 72.8
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 3.2e-279 964.9 650 73.4
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 9.3e-279 963.4 654 73.2
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 3.5e-278 961.4 675 71.1
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.0e-277 959.9 648 73.1
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 8.7e-277 956.8 676 71.2
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.5e-276 956.1 652 73.3
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 4.3e-276 954.5 601 79.0
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 9.6e-276 953.4 652 73.3
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.3e-275 953.0 652 73.3
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 2.1e-275 952.2 661 72.9
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 6.2e-275 950.7 649 71.8
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 8.1e-275 950.3 680 71.0
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 3.1e-274 948.3 601 76.9
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 4.0e-274 948.0 622 75.9
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 5.3e-274 947.6 659 71.3
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.6e-273 945.3 600 78.2
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 3.0e-269 931.8 658 70.5
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 6.7e-269 930.6 606 77.1
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 8.7e-269 930.2 658 71.1
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 3.3e-268 928.3 658 70.8
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 4.8e-267 924.5 655 71.0
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 6.2e-267 924.1 651 71.7
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 2.4e-266 922.2 601 74.7
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 9.0e-266 920.2 657 70.0
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 1.5e-265 919.5 658 70.4
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 1.1e-263 913.3 650 70.0
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 1.4e-263 912.9 659 70.1
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.6e-262 909.4 683 68.8
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 5.1e-261 904.4 654 69.4
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 1.5e-260 902.9 605 73.4
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 2.4e-258 895.6 606 71.9
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 9.0e-258 893.6 742 62.9
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 5.2e-237 824.7 517 77.0
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.3e-235 820.1 673 63.0
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 2.0e-233 812.8 657 65.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 2.9e-232 808.9 624 65.1
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 1.9e-231 806.2 671 63.0
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 7.0e-226 787.7 672 60.9
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 8.8e-221 770.8 725 56.0
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.8e-218 763.1 472 81.1
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.5e-215 752.7 756 51.2
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 2.8e-214 749.2 824 49.3
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.8e-214 749.2 773 50.7
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 7.0e-210 734.6 859 47.0
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 1.5e-207 726.9 454 79.1
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 8.0e-206 721.1 614 60.3
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.1e-191 674.1 655 52.7
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 6.8e-189 664.8 423 76.6
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 8.4e-171 604.7 541 59.3
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 6.9e-165 585.1 548 55.5
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.4e-162 577.4 437 68.6
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 3.4e-132 476.5 310 74.5
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.7e-121 439.5 396 59.1
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 4.8e-118 429.5 260 81.2
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.1e-105 387.5 353 56.4
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 3.5e-100 370.2 259 70.7
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 4.4e-95 353.2 215 79.1
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.4e-85 321.6 335 50.7
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.6e-84 318.2 547 39.5
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 5.2e-64 250.0 155 76.1
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.9e-46 191.0 140 67.1
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.0e-44 183.3 140 64.3
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 4.8e-41 173.7 484 30.4
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 5.7e-18 97.1 65 73.8
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 1.7e-17 95.5 63 76.2
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 7.4e-10 70.1 49 73.5
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 7.4e-10 70.1 88 43.2
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 9.1e-08 63.2 48 62.5
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 2.6e-07 61.6 50 60.0


User provided reference genes

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