Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 3.8e-171 604.7 310 100.0
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 2.2e-150 535.8 310 87.7
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 8.4e-142 507.3 310 83.5
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 1.9e-130 469.5 308 78.2
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 9.6e-130 467.2 309 79.0
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 3.6e-129 465.3 309 77.3
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.0e-127 459.5 302 78.5
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.2e-125 451.8 302 77.5
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.7e-123 444.5 299 77.6
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 1.4e-120 436.8 307 73.9
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 1.2e-119 433.7 307 73.6
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 2.9e-118 429.1 307 73.0
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 2.9e-118 429.1 307 73.3
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 9.3e-117 424.1 307 72.3
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 1.2e-116 423.7 308 71.1
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 3.0e-115 419.1 307 70.0
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 1.9e-114 416.4 311 70.1
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 2.5e-114 416.0 311 69.8
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 3.3e-114 415.6 311 69.8
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 2.8e-113 412.5 307 68.7
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 1.8e-112 409.8 301 69.8
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 2.4e-112 409.5 305 68.2
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.1e-112 409.1 307 70.0
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.1e-112 409.1 307 70.0
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 6.9e-112 407.9 307 68.7
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 9.0e-112 407.5 309 67.0
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 9.0e-112 407.5 307 68.1
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 4.5e-111 405.2 307 67.1
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 2.9e-110 402.5 310 68.1
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 3.8e-110 402.1 307 69.7
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 1.9e-109 399.8 284 72.5
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 2.5e-109 399.4 306 67.0
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 4.2e-109 398.7 306 69.3
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 5.5e-109 398.3 269 75.5
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 7.1e-109 397.9 307 67.4
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 7.1e-109 397.9 309 66.3
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 1.6e-108 396.7 312 65.7
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 3.5e-108 395.6 288 69.8
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 4.6e-108 395.2 307 66.4
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 3.0e-107 392.5 272 71.0
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 3.9e-107 392.1 302 65.9
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 5.1e-107 391.7 264 73.9
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 8.7e-107 391.0 309 68.6
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 4.3e-106 388.7 304 69.4
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 5.7e-106 388.3 307 68.1
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 1.3e-105 387.1 307 66.1
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 4.1e-104 382.1 305 64.6
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 5.3e-104 381.7 306 62.7
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 5.3e-104 381.7 306 66.7
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 1.2e-103 380.6 256 77.0
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 1.2e-103 380.6 303 65.3
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 2.6e-103 379.4 307 62.9
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 7.6e-103 377.9 286 65.7
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.0e-102 377.5 264 70.8
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 1.3e-102 377.1 272 68.8
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 3.8e-102 375.6 315 62.5
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 5.0e-102 375.2 305 63.0
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 6.5e-102 374.8 308 61.7
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 6.5e-102 374.8 264 70.1
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 1.1e-101 374.0 305 63.0
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 1.9e-101 373.2 309 62.5
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 1.9e-101 373.2 338 60.7
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 5.5e-101 371.7 306 62.7
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.6e-100 370.2 303 62.7
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.6e-100 370.2 287 68.3
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 2.1e-100 369.8 306 61.1
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 3.6e-100 369.0 305 63.0
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 7.9e-100 367.9 302 62.9
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 1.0e-99 367.5 264 70.1
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 1.3e-99 367.1 302 62.9
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 1.5e-98 363.6 294 64.6
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 1.5e-98 363.6 311 60.5
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 1.9e-98 363.2 298 61.4
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 3.3e-98 362.5 266 70.3
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 7.4e-98 361.3 328 58.8
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 7.4e-98 361.3 309 60.8
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 3.7e-97 359.0 333 58.0
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 1.8e-96 356.7 307 63.8
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 3.1e-96 355.9 302 60.6
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 3.1e-96 355.9 270 67.4
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 5.3e-96 355.1 309 58.9
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 2.6e-95 352.8 266 67.3
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 7.7e-95 351.3 289 63.7
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 2.5e-93 346.3 309 60.8
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 2.5e-93 346.3 253 67.2
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 9.4e-93 344.4 304 58.2
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 1.6e-92 343.6 247 72.5
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 1.6e-92 343.6 305 59.3
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 7.9e-92 341.3 272 63.6
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 1.5e-90 337.0 300 58.7
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 2.6e-87 326.2 304 56.9
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 2.2e-86 323.2 263 59.7
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 6.5e-86 321.6 270 63.7
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 4.2e-85 318.9 304 54.6
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 1.5e-82 310.5 328 53.0
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.4e-80 303.9 238 64.3
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 1.8e-80 303.5 243 63.4
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 8.5e-78 294.7 374 50.5
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 1.1e-77 294.3 264 56.1
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 2.5e-77 293.1 250 61.6
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 5.5e-77 292.0 242 62.8
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 2.1e-76 290.0 191 74.9
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 8.0e-76 288.1 328 50.6
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 6.1e-68 261.9 213 65.7
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 8.8e-67 258.1 176 73.3
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 1.2e-63 247.7 166 74.7
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 4.5e-63 245.7 301 48.2
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 6.5e-62 241.9 265 49.4
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 7.2e-61 238.4 261 49.0
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 7.2e-61 238.4 167 72.5
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.2e-58 231.1 147 79.6
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 9.8e-58 228.0 266 44.0
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 1.4e-51 207.6 161 67.1
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 3.4e-42 176.4 214 49.5
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 8.9e-35 151.8 146 56.8
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 2.0e-34 150.6 97 78.4
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 7.5e-34 148.7 156 56.4
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 3.7e-33 146.4 80 90.0
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 1.9e-32 144.1 277 33.6
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 4.1e-32 142.9 166 51.2
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 7.1e-32 142.1 109 71.6
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 6.0e-31 139.0 170 49.4
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 3.3e-29 133.3 114 64.9
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 1.1e-27 128.3 219 36.1
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 1.8e-27 127.5 113 62.8
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 7.6e-26 122.1 85 69.4
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 8.4e-25 118.6 297 32.3
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 8.7e-22 108.6 126 49.2
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 5.6e-21 105.9 127 48.8
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 2.1e-07 60.8 93 39.8
MCO06G261 Micromonas commoda HOM05D005938 ORTHO05D044307 7.9e-07 58.9 149 28.2


User provided reference genes

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