Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 2283.1 1141 100.0
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1875.5 1143 84.2
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 0.0e+00 1631.7 1157 74.4
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 0.0e+00 1523.8 1141 71.5
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1518.4 1141 71.2
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1494.6 1151 70.0
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 0.0e+00 1473.0 1139 68.8
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1472.2 1219 66.3
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1416.0 1202 65.1
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1301.6 972 69.8
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 0.0e+00 1162.9 1187 57.0
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 0.0e+00 1151.3 1217 55.7
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 0.0e+00 1128.2 1184 55.7
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 0.0e+00 1115.9 1179 55.9
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 6.1e-307 1057.7 1163 53.7
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 3.2e-300 1035.4 1160 52.6
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 7.2e-300 1034.2 1147 50.9
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 1.8e-298 1029.6 1141 53.3
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 3.6e-291 1005.4 1169 51.6
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 3.0e-290 1002.3 1148 52.4
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 3.9e-285 985.3 1224 49.6
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 2.8e-283 979.2 1158 51.0
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 6.8e-282 974.5 1192 49.6
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 2.2e-280 969.5 1144 51.0
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 3.2e-279 965.7 1175 50.2
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 3.5e-278 962.2 1203 49.7
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 6.6e-277 958.0 1156 50.9
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 5.6e-276 954.9 1207 48.6
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 4.0e-274 948.7 1119 50.4
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 3.5e-270 935.6 1141 50.4
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 4.1e-263 912.1 1203 48.0
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 1.7e-261 906.7 1146 48.0
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 3.9e-261 905.6 1170 48.8
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 8.6e-261 904.4 1161 48.2
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 9.6e-260 901.0 1162 48.1
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 1.6e-259 900.2 1167 47.3
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 2.8e-259 899.4 1166 48.7
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 2.8e-259 899.4 1268 45.2
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 1.2e-257 894.0 1148 48.4
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 3.4e-257 892.5 1158 48.4
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.3e-256 890.6 912 54.5
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.3e-253 880.6 1127 48.8
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 1.3e-253 880.6 1154 47.3
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 6.6e-253 878.2 1188 46.8
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 4.8e-251 872.1 1148 47.4
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 4.0e-250 869.0 1165 47.3
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 6.9e-250 868.2 1103 48.7
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 4.6e-246 855.5 1123 47.7
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 1.5e-244 850.5 1149 46.2
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 4.8e-243 845.5 1171 46.1
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 1.2e-241 840.9 1168 46.6
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 9.9e-241 837.8 1157 46.5
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 5.5e-239 832.0 1159 46.2
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 6.7e-237 825.1 1203 44.1
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 8.7e-237 824.7 1176 44.5
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 4.8e-235 818.9 1177 44.5
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 4.5e-233 812.4 1173 45.3
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 2.9e-232 809.7 1173 45.2
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 4.6e-230 802.4 1160 44.3
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 1.0e-229 801.2 1159 44.5
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 2.3e-229 800.0 1134 44.8
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 5.1e-229 798.9 559 71.4
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 2.0e-225 786.9 1167 44.4
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 6.5e-224 781.9 1157 44.2
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.9e-223 780.4 555 69.9
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 3.6e-222 776.2 1194 44.0
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 1.8e-221 773.9 1051 46.4
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 1.3e-219 767.7 1161 42.4
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 1.7e-216 757.3 1156 43.3
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 3.8e-216 756.1 1056 45.3
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 2.5e-215 753.4 1056 45.4
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 3.2e-215 753.1 1142 42.6
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 1.2e-214 751.1 1154 42.5
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 1.6e-214 750.7 1114 42.5
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 7.9e-214 748.4 924 46.9
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 1.4e-213 747.7 1155 43.1
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 5.1e-213 745.7 1159 42.7
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 8.8e-213 745.0 984 46.1
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 2.8e-211 740.0 1163 41.4
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 4.1e-210 736.1 1125 42.9
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 4.5e-209 732.6 1129 42.4
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 5.0e-208 729.2 1047 44.5
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 7.9e-206 721.8 1155 42.7
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 1.8e-205 720.7 1143 40.5
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 3.5e-201 706.4 1144 42.4
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 6.5e-200 702.2 1102 41.4
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 4.2e-199 699.5 1122 40.1
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 5.5e-199 699.1 1123 40.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.7e-198 696.8 1187 42.2
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 2.7e-198 696.8 1208 40.3
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.8e-197 694.1 997 44.7
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 4.0e-197 693.0 1066 43.0
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 6.7e-197 692.2 830 49.4
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 5.7e-196 689.1 1117 40.7
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 1.4e-194 684.5 873 45.7
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 1.1e-191 674.9 1162 39.6
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 4.2e-183 646.4 1046 41.0
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 2.3e-176 624.0 572 54.5
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 6.6e-176 622.5 1061 38.7
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.1e-174 617.5 1079 39.4
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 6.1e-174 615.9 946 44.0
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.8e-148 529.6 509 55.4
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.0e-144 518.8 1193 35.0
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 5.4e-138 496.5 917 39.7
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.2e-137 495.4 948 40.0
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 2.5e-135 487.6 430 57.9
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 2.6e-132 477.6 760 37.6
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 1.9e-130 471.5 316 72.2
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 4.8e-118 430.3 553 44.1
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 6.2e-118 429.9 498 45.2
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 1.0e-115 422.5 822 36.9
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 4.2e-114 417.2 518 43.8
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 3.9e-112 410.6 983 33.5
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 4.3e-111 407.1 822 39.7
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 4.5e-84 317.4 714 36.0
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 5.9e-84 317.0 228 72.8
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.7e-70 272.3 222 61.3
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 1.2e-65 256.1 763 30.7
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 5.2e-40 171.0 158 63.3
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 1.2e-36 159.8 644 29.5
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 9.9e-31 140.2 292 33.9
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.1e-28 132.5 651 29.3
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 7.1e-21 107.5 80 67.5
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 2.8e-17 95.5 186 32.3
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.1e-16 92.0 173 39.3
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 4.0e-16 91.7 94 50.0
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 9.0e-16 90.5 155 41.3
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 1.5e-15 89.7 57 66.7
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 4.5e-15 88.2 71 56.3
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 4.5e-15 88.2 51 74.5
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 4.5e-15 88.2 51 74.5
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 2.2e-14 85.9 55 67.3
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 8.4e-14 84.0 151 42.4


User provided reference genes

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