Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 7.6e-189 663.7 338 100.0
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 3.3e-168 595.1 340 88.8
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.8e-156 555.1 340 83.5
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 5.0e-148 528.1 340 77.9
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 2.1e-146 522.7 350 77.1
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.0e-138 494.2 339 75.2
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 4.4e-136 488.4 339 74.0
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.8e-136 487.3 340 75.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 1.8e-129 466.5 342 68.7
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 9.5e-123 444.1 341 67.4
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.4e-121 440.3 314 72.3
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.6e-120 436.0 314 72.6
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 8.6e-116 421.0 344 63.1
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.0e-113 414.1 344 63.4
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.6e-112 409.5 345 62.0
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.7e-111 406.8 344 60.8
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.1e-110 404.1 341 61.6
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.0e-109 399.8 287 70.0
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 6.0e-109 398.3 344 60.5
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.3e-108 397.1 345 62.3
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.3e-108 396.4 344 61.3
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 6.6e-108 394.8 343 57.7
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 8.6e-108 394.4 344 59.3
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 9.5e-107 391.0 344 62.2
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.1e-106 389.8 344 60.5
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 6.2e-106 388.3 339 59.0
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 4.4e-104 382.1 344 57.8
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 9.8e-104 380.9 344 59.0
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.2e-103 379.8 346 59.8
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.4e-103 378.3 344 59.6
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.4e-102 377.1 355 59.7
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.0e-100 370.9 344 56.1
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.3e-100 370.5 343 57.1
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.3e-100 369.8 344 56.4
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.0e-100 369.4 344 56.1
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.5e-99 366.3 341 58.9
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.6e-99 365.2 340 56.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 7.3e-99 364.8 341 59.8
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 2.1e-98 363.2 340 56.5
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.6e-98 362.5 343 57.7
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.4e-97 360.5 344 57.3
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.3e-97 359.8 341 57.5
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 3.1e-97 359.4 340 55.6
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.1e-97 359.4 344 53.8
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 5.2e-97 358.6 336 55.4
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 6.8e-97 358.2 347 55.9
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 8.9e-97 357.8 340 55.3
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.5e-96 357.1 343 55.1
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.0e-96 356.7 343 54.5
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.0e-96 356.7 344 53.8
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 2.0e-96 356.7 339 54.6
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.3e-95 354.0 340 55.3
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.3e-95 354.0 341 56.3
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.7e-95 353.6 343 57.1
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.7e-95 353.6 343 54.8
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.9e-95 352.8 344 57.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.6e-93 347.1 340 55.0
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.3e-92 344.0 343 53.1
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.9e-92 342.4 344 52.0
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 6.6e-92 341.7 342 53.5
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 8.6e-92 341.3 343 53.4
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.1e-91 340.9 341 53.4
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 3.3e-91 339.3 343 53.4
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 3.3e-91 339.3 346 52.9
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.3e-91 339.3 334 55.1
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 4.3e-91 339.0 346 52.0
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 7.3e-91 338.2 331 54.7
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 7.3e-91 338.2 340 52.9
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 9.6e-91 337.8 346 52.6
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.4e-89 333.2 339 51.6
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.4e-89 333.2 343 53.4
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.4e-89 333.2 343 53.4
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 6.9e-89 331.6 346 50.9
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.2e-88 330.9 344 54.4
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.6e-88 329.7 344 53.2
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 3.4e-88 329.3 327 55.7
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 5.8e-88 328.6 338 52.1
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 9.9e-88 327.8 345 52.2
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 9.9e-88 327.8 344 50.6
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 3.8e-87 325.9 347 50.7
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.1e-86 324.3 345 51.9
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.4e-86 323.9 345 51.9
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.4e-86 323.9 339 52.2
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.9e-86 323.6 346 50.0
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 2.4e-86 323.2 340 50.6
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.4e-86 323.2 344 52.3
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 5.4e-86 322.0 346 50.9
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 9.3e-86 321.2 339 50.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.7e-84 317.0 324 53.7
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 2.3e-84 316.6 337 50.4
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.3e-84 316.6 338 50.9
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.0e-84 316.2 347 49.6
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 5.1e-84 315.5 339 49.9
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 8.7e-84 314.7 337 51.0
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 7.3e-83 311.6 330 50.3
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.6e-82 310.5 339 50.1
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 5.3e-81 305.4 329 50.5
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 9.0e-81 304.7 344 48.5
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 2.0e-80 303.5 344 48.0
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.6e-80 303.1 344 48.0
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.4e-80 302.8 345 48.4
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 4.5e-80 302.4 306 53.6
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 7.6e-80 301.6 335 51.9
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.7e-79 300.4 305 52.8
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.2e-79 300.1 352 50.6
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 6.4e-79 298.5 348 50.0
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.4e-78 296.6 340 46.8
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 5.4e-78 295.4 293 53.6
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 9.3e-78 294.7 340 49.1
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.2e-77 294.3 347 48.1
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 6.0e-77 292.0 260 61.5
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 2.3e-76 290.0 345 48.7
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 5.1e-76 288.9 292 52.4
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 5.1e-76 288.9 348 47.7
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.1e-76 288.9 327 48.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.3e-75 285.8 323 49.5
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 5.6e-75 285.4 346 48.0
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.6e-75 284.6 342 47.4
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.3e-74 284.3 305 51.1
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 3.7e-74 282.7 346 47.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.7e-74 282.7 343 47.2
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.4e-72 276.2 339 47.5
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 7.6e-72 275.0 327 48.6
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.2e-71 273.5 336 46.1
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.8e-71 272.7 342 47.4
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 7.4e-67 258.5 346 44.5
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.4e-65 253.4 296 50.0
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 3.8e-63 246.1 281 44.5
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 4.9e-63 245.7 341 43.1
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.1e-62 244.6 344 41.3
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 2.7e-61 240.0 280 46.4
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.4e-57 226.9 199 56.8
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.0e-55 221.5 309 42.7
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.1e-53 212.2 137 70.8
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 1.0e-52 211.5 346 40.2
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.2e-50 203.8 334 37.4
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.4e-49 201.1 340 39.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.9e-49 198.7 137 67.9
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.4e-48 196.4 129 69.0
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 2.1e-45 187.2 338 37.9
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.8e-44 184.1 247 44.5
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.7e-42 177.6 210 42.9
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 8.5e-39 165.2 333 38.1
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.4e-36 157.9 294 36.7
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 4.2e-30 136.3 103 64.1
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.2e-19 101.7 156 42.3
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 7.0e-09 65.9 175 28.0
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.9e-07 60.5 39 76.9


User provided reference genes

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