Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 1.5e-167 592.8 311 100.0
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 2.6e-151 538.9 311 91.0
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 2.0e-111 406.4 312 67.9
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.3e-105 387.1 311 69.5
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 7.2e-101 371.3 308 65.6
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 1.2e-100 370.5 312 65.7
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 9.7e-98 360.9 308 64.9
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.4e-96 356.3 311 64.0
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 9.4e-93 344.4 339 59.0
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.6e-92 343.6 314 61.1
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.0e-91 340.9 259 68.3
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.0e-87 326.6 315 59.0
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.0e-86 324.3 320 58.1
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 1.9e-85 320.1 320 56.6
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 1.6e-84 317.0 309 57.9
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 3.6e-84 315.8 345 54.2
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.0e-83 314.3 307 59.9
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 1.0e-83 314.3 337 55.5
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.4e-83 313.9 328 55.2
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 5.2e-83 312.0 315 56.8
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 6.8e-83 311.6 238 68.1
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 1.2e-82 310.8 314 57.0
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 2.6e-82 309.7 320 57.2
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 7.5e-82 308.1 317 58.4
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.3e-81 307.4 346 52.0
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 1.8e-80 303.5 354 51.1
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 7.0e-80 301.6 337 53.7
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.2e-79 300.8 312 57.4
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 5.9e-79 298.5 312 52.6
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 7.7e-79 298.1 325 54.2
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 7.7e-79 298.1 311 54.3
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 6.5e-78 295.0 317 53.6
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 8.5e-78 294.7 311 55.3
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 1.9e-77 293.5 307 54.7
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 1.2e-76 290.8 339 51.0
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.6e-76 289.3 299 54.2
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 6.1e-76 288.5 304 55.3
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 2.3e-75 286.6 305 55.7
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 3.0e-75 286.2 308 53.6
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.0e-75 285.8 313 51.8
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 6.8e-75 285.0 299 53.8
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 8.8e-75 284.6 298 56.0
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 2.0e-74 283.5 308 52.6
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 2.6e-74 283.1 313 51.4
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 5.7e-74 282.0 309 53.1
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 1.3e-73 280.8 304 52.6
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 2.8e-73 279.6 300 53.0
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.8e-73 279.6 299 52.5
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 6.3e-73 278.5 301 53.8
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 8.3e-73 278.1 319 51.4
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 1.8e-72 276.9 304 53.6
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 3.1e-72 276.2 303 51.8
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 3.1e-72 276.2 310 53.2
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 5.4e-72 275.4 319 51.4
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 5.4e-72 275.4 322 50.6
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 9.1e-72 274.6 329 49.5
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 1.2e-71 274.2 313 51.4
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.6e-71 273.9 320 50.9
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.5e-71 272.7 291 54.0
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 3.5e-71 272.7 300 52.0
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 4.5e-71 272.3 334 50.3
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.7e-70 270.4 301 51.5
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 2.9e-70 269.6 292 52.4
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.9e-69 266.9 318 49.7
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 4.2e-69 265.8 318 50.3
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 7.2e-69 265.0 291 53.6
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 3.6e-68 262.7 319 49.5
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 1.4e-67 260.8 312 48.7
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 6.8e-67 258.5 324 47.5
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 4.4e-66 255.8 308 48.7
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 5.7e-66 255.4 326 48.8
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.3e-65 254.2 320 48.8
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 1.3e-65 254.2 317 50.2
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 6.3e-65 251.9 316 47.5
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 1.8e-64 250.4 310 47.4
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 1.2e-63 247.7 312 47.1
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 1.6e-63 247.3 301 50.2
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 3.5e-63 246.1 303 49.5
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 3.5e-63 246.1 308 46.4
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.6e-63 245.7 319 46.7
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 5.9e-63 245.4 317 46.7
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 2.9e-62 243.0 368 43.5
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 5.0e-62 242.3 316 48.4
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.6e-60 237.3 291 48.8
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 4.7e-60 235.7 314 46.8
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 4.7e-60 235.7 292 50.0
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 4.7e-60 235.7 364 42.3
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 4.7e-60 235.7 318 47.2
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 6.1e-60 235.3 314 47.5
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 6.1e-60 235.3 311 46.9
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 8.0e-60 235.0 311 46.9
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 3.1e-59 233.0 314 47.1
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 3.1e-59 233.0 314 47.1
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 4.0e-59 232.6 307 45.6
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 5.2e-59 232.3 314 47.1
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 5.2e-59 232.3 343 44.3
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 6.8e-59 231.9 318 47.5
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 8.9e-59 231.5 289 50.2
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 1.5e-58 230.7 315 45.7
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.5e-58 230.7 312 44.9
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 2.6e-58 229.9 314 45.9
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 7.5e-58 228.4 316 47.2
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 8.3e-57 224.9 353 41.9
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 1.4e-56 224.2 312 45.5
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 1.9e-56 223.8 314 45.9
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 7.0e-56 221.9 246 54.5
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 9.2e-56 221.5 320 45.0
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 1.2e-55 221.1 312 44.9
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.7e-55 219.9 315 44.8
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 6.0e-55 218.8 280 48.2
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 2.3e-54 216.9 299 45.8
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.5e-53 214.2 235 54.0
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 4.3e-53 212.6 232 49.1
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.6e-52 210.7 314 44.3
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 6.8e-51 205.3 314 40.1
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 8.9e-51 204.9 252 44.8
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.5e-50 204.1 284 42.6
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.5e-50 204.1 291 46.4
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 3.3e-45 186.4 309 41.4
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.6e-45 185.7 241 47.3
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.6e-44 184.1 240 47.1
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.6e-44 183.0 134 67.2
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 1.4e-43 181.0 225 48.0
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 1.2e-42 177.9 310 39.0
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 5.8e-42 175.6 190 50.5
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 7.6e-42 175.3 176 51.7
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 6.0e-39 165.6 217 45.6
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 3.0e-38 163.3 253 40.3
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.0e-34 150.6 220 41.8
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 3.4e-34 149.8 290 37.2
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 6.4e-33 145.6 204 40.7
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 2.4e-32 143.7 145 55.2
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 4.2e-32 142.9 308 34.7
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.5e-29 134.4 226 41.2
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.6e-28 131.0 230 33.5
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 6.9e-27 125.6 134 53.7
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 6.4e-25 119.0 259 32.8
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.9e-24 117.5 167 42.5
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.2e-23 114.8 149 45.0
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 7.9e-23 112.1 184 38.6
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 6.6e-22 109.0 246 35.8
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 9.6e-21 105.1 232 36.6
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 2.6e-18 97.1 194 36.1
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 4.9e-17 92.8 70 60.0
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 3.5e-15 86.7 208 32.7
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 1.3e-14 84.7 99 53.5
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 5.6e-13 79.3 255 29.8
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 2.8e-12 77.0 103 35.9
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.8e-11 74.3 93 39.8
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 6.9e-11 72.4 99 45.5
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.5e-10 71.2 100 34.0
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.0e-09 68.6 209 27.8


User provided reference genes

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