Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 2.7e-26 121.3 65 100.0
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 1.9e-24 115.2 65 93.8
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 8.1e-23 109.8 65 92.3
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 5.3e-22 107.1 65 84.6
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 2.0e-21 105.1 65 81.5
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 1.3e-20 102.4 65 80.0
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 2.9e-20 101.3 65 84.6
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 3.8e-20 100.9 65 81.5
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 3.8e-20 100.9 65 80.0
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 4.9e-20 100.5 65 78.5
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 83.1
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 1.1e-19 99.4 55 92.7
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 81.5
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 3.2e-19 97.8 65 80.0
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 4.2e-19 97.4 61 85.2
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 5.5e-19 97.1 65 76.9
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 7.1e-19 96.7 62 77.4
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 9.3e-19 96.3 65 80.0
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 1.2e-18 95.9 55 87.3
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 1.6e-18 95.5 63 79.4
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 1.6e-18 95.5 63 79.4
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 1.6e-18 95.5 65 80.0
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 1.6e-18 95.5 62 77.4
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 1.6e-18 95.5 62 77.4
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 2.7e-18 94.7 55 85.5
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 3.5e-18 94.4 62 74.2
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 3.5e-18 94.4 65 76.9
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 6.0e-18 93.6 58 84.5
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 7.9e-18 93.2 56 80.4
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 7.9e-18 93.2 62 74.2
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 1.0e-17 92.8 56 83.9
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 1.3e-17 92.4 55 81.8
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 2.3e-17 91.7 65 75.4
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 2.3e-17 91.7 65 75.4
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 3.0e-17 91.3 65 72.3
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 3.9e-17 90.9 55 80.0
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 5.1e-17 90.5 56 78.6
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 5.1e-17 90.5 62 75.8
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 5.1e-17 90.5 65 75.4
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 5.1e-17 90.5 56 76.8
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 6.7e-17 90.1 55 81.8
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 6.7e-17 90.1 65 75.4
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 6.7e-17 90.1 58 79.3
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 6.7e-17 90.1 58 79.3
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 8.7e-17 89.7 58 77.6
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 8.7e-17 89.7 65 75.4
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 1.1e-16 89.4 55 80.0
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 1.1e-16 89.4 55 80.0
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 1.1e-16 89.4 65 73.8
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 1.1e-16 89.4 55 80.0
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 1.1e-16 89.4 56 80.4
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 1.1e-16 89.4 56 78.6
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 1.5e-16 89.0 55 80.0
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 1.5e-16 89.0 55 78.2
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 1.9e-16 88.6 65 73.8
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 1.9e-16 88.6 65 73.8
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 1.9e-16 88.6 65 70.8
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 1.9e-16 88.6 65 73.8
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 2.5e-16 88.2 55 78.2
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 2.5e-16 88.2 55 78.2
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 2.5e-16 88.2 65 70.8
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 2.5e-16 88.2 56 75.0
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 3.3e-16 87.8 55 76.4
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 3.3e-16 87.8 65 70.8
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 3.3e-16 87.8 62 74.2
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 5.7e-16 87.0 55 76.4
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 5.7e-16 87.0 65 73.8
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 5.7e-16 87.0 65 69.2
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 7.4e-16 86.7 65 69.2
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 7.4e-16 86.7 65 72.3
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 7.4e-16 86.7 65 67.7
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 9.6e-16 86.3 65 72.3
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 1.6e-15 85.5 55 72.7
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 2.8e-15 84.7 65 69.2
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 3.7e-15 84.3 62 64.5
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 4.8e-15 84.0 65 72.3
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 5.3e-14 80.5 55 69.1
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 5.3e-14 80.5 56 66.1
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 1.2e-13 79.3 85 58.8
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 1.5e-13 79.0 53 69.8
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 2.6e-13 78.2 65 61.5
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 8.4e-12 73.2 35 94.3
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 4.2e-11 70.9 55 61.8
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 9.3e-11 69.7 36 86.1
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 2.7e-10 68.2 49 67.3
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 4.6e-10 67.4 35 82.9
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 1.8e-09 65.5 39 82.1
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 4.3e-08 60.8 36 86.1
Ca_17793_v3 Cicer arietinum L. HOM05D007493 ORTHO05D009465 9.7e-08 59.7 62 56.5
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 2.2e-07 58.5 38 78.9
Sabra15G0110700 Salix brachista HOM05D000069 ORTHO05D000060 1.1e-06 56.2 35 68.6
BcaB03g15377 Brassica carinata HOM05D000053 ORTHO05D000035 2.4e-06 55.1 54 59.3


User provided reference genes

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