Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.0e-48 195.7 115 100.0
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.5e-24 116.3 81 81.5
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 9.3e-22 107.1 81 75.3
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 2.5e-19 99.0 83 72.3
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 2.8e-18 95.5 82 78.0
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 4.5e-16 88.2 82 75.6
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 5.9e-16 87.8 78 57.7
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.9e-16 87.8 78 59.0
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.7e-15 86.3 78 64.1
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.2e-15 85.9 81 71.6
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.9e-15 85.5 79 73.4
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 6.5e-15 84.3 86 62.8
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 8.5e-15 84.0 86 61.6
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.5e-15 84.0 78 73.1
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 1.4e-14 83.2 80 67.5
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.9e-14 82.8 83 54.2
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.9e-14 82.8 83 73.5
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.5e-14 82.4 81 58.0
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 2.5e-14 82.4 81 58.0
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.5e-14 82.4 83 54.2
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.5e-14 82.4 82 69.5
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.2e-14 82.0 82 65.9
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 4.2e-14 81.6 82 57.3
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 5.5e-14 81.3 82 51.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 5.5e-14 81.3 77 70.1
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 5.5e-14 81.3 75 54.7
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 7.2e-14 80.9 91 51.6
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 9.4e-14 80.5 82 52.4
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.6e-13 79.7 83 53.0
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.6e-13 79.7 85 52.9
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 2.1e-13 79.3 84 64.3
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 2.1e-13 79.3 84 59.5
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.1e-13 79.3 83 53.0
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 2.7e-13 79.0 82 51.2
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 3.6e-13 78.6 85 67.1
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 4.6e-13 78.2 85 68.2
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 4.6e-13 78.2 82 48.8
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.9e-13 77.4 74 58.1
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.4e-12 76.6 76 71.1
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.8e-12 76.3 83 68.7
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.3e-12 75.9 82 47.6
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 3.0e-12 75.5 88 62.5
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 3.0e-12 75.5 88 62.5
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 3.0e-12 75.5 88 62.5
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 3.9e-12 75.1 78 51.3
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 3.9e-12 75.1 87 52.9
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 3.9e-12 75.1 87 52.9
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.9e-12 75.1 80 53.8
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 5.1e-12 74.7 80 53.8
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 5.1e-12 74.7 82 47.6
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 6.7e-12 74.3 81 50.6
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 6.7e-12 74.3 82 48.8
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 6.7e-12 74.3 80 50.0
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 6.7e-12 74.3 80 50.0
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 6.7e-12 74.3 93 60.2
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 8.8e-12 73.9 79 48.1
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 8.8e-12 73.9 74 74.3
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.1e-11 73.6 79 48.1
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.5e-11 73.2 77 48.1
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.5e-11 73.2 83 51.8
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.0e-11 72.8 84 48.8
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 2.0e-11 72.8 81 65.4
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 2.0e-11 72.8 84 48.8
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 2.5e-11 72.4 82 48.8
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.3e-11 72.0 81 61.7
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 3.3e-11 72.0 80 48.8
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.3e-11 72.0 81 51.9
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.3e-11 72.0 82 50.0
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 3.3e-11 72.0 78 51.3
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 3.3e-11 72.0 83 49.4
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 4.3e-11 71.6 85 48.2
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 5.7e-11 71.2 86 50.0
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 5.7e-11 71.2 37 83.8
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 5.7e-11 71.2 83 48.2
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 5.7e-11 71.2 79 48.1
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 5.7e-11 71.2 75 50.7
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 5.7e-11 71.2 70 57.1
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 7.4e-11 70.9 87 59.8
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 7.4e-11 70.9 79 54.4
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 7.4e-11 70.9 79 54.4
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 7.4e-11 70.9 74 58.1
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 7.4e-11 70.9 37 86.5
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 9.7e-11 70.5 81 48.1
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 9.7e-11 70.5 81 48.1
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 9.7e-11 70.5 37 86.5
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 9.7e-11 70.5 78 50.0
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 9.7e-11 70.5 76 50.0
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.3e-10 70.1 78 62.8
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.3e-10 70.1 37 86.5
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.7e-10 69.7 81 63.0
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.7e-10 69.7 37 83.8
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.7e-10 69.7 82 62.2
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.2e-10 69.3 37 83.8
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 2.2e-10 69.3 37 83.8
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.8e-10 68.9 80 47.5
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.7e-10 68.6 87 57.5
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 3.7e-10 68.6 80 61.2
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 3.7e-10 68.6 80 60.0
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 3.7e-10 68.6 84 60.7
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 4.8e-10 68.2 69 69.6
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.8e-10 68.2 80 47.5
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 6.3e-10 67.8 37 81.1
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 8.2e-10 67.4 70 68.6
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 8.2e-10 67.4 80 57.5
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.4e-09 66.6 72 50.0
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.8e-09 66.2 37 78.4
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.8e-09 66.2 82 47.6
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.4e-09 65.9 37 78.4
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 3.1e-09 65.5 37 81.1
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 3.1e-09 65.5 37 81.1
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 3.1e-09 65.5 69 66.7
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 6.9e-09 64.3 37 78.4
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 6.9e-09 64.3 37 78.4
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 6.9e-09 64.3 37 78.4
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.2e-08 63.5 37 75.7
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 1.5e-08 63.2 75 60.0
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 2.0e-08 62.8 80 61.2
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.6e-08 62.4 37 75.7
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.6e-08 62.4 37 73.0
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 3.4e-08 62.0 80 48.8
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 3.4e-08 62.0 75 61.3
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 5.9e-08 61.2 37 70.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.0e-07 60.5 77 61.0
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 8.5e-07 57.4 37 70.3
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 8.5e-07 57.4 37 70.3
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.1e-06 57.0 37 70.3
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 1.9e-06 56.2 74 43.2
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.9e-06 56.2 67 46.3
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 5.5e-06 54.7 80 57.5


User provided reference genes

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