Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 2.1e-161 572.4 303 100.0
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 2.2e-139 499.2 310 86.1
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 5.2e-112 408.3 303 71.0
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 3.6e-97 359.0 275 68.0
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.1e-93 345.9 264 67.0
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.8e-89 332.8 260 65.4
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 3.6e-89 332.4 303 58.7
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 9.5e-82 307.8 265 57.7
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 2.6e-79 299.7 259 61.0
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.7e-78 297.0 253 59.7
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.7e-78 297.0 253 59.7
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 3.2e-77 292.7 252 58.3
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 1.2e-76 290.8 249 58.6
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 1.6e-76 290.4 270 55.9
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 1.6e-76 290.4 261 56.3
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 3.5e-76 289.3 254 60.6
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 7.8e-76 288.1 270 54.8
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 1.7e-75 287.0 270 54.8
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 3.6e-73 279.3 299 52.5
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 1.8e-72 276.9 261 57.5
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 3.4e-71 272.7 267 57.7
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 3.4e-71 272.7 263 57.4
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 4.4e-71 272.3 261 58.6
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.3e-70 270.8 270 57.4
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.7e-70 270.4 258 53.9
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 6.4e-70 268.5 270 51.9
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 1.4e-69 267.3 269 52.8
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 2.4e-69 266.5 258 53.1
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.2e-68 264.2 259 54.4
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.1e-68 263.5 255 53.3
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.1e-68 263.5 255 53.3
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 6.0e-68 261.9 255 52.9
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 7.8e-68 261.5 259 54.1
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 6.6e-67 258.5 255 52.2
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.6e-65 253.8 259 52.1
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 5.2e-64 248.8 154 75.3
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 5.2e-64 248.8 211 57.8
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 8.9e-64 248.1 154 74.7
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 1.5e-63 247.3 277 50.5
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 2.0e-63 246.9 154 74.0
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 2.0e-63 246.9 220 54.5
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 2.6e-63 246.5 273 50.2
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 5.8e-63 245.4 220 53.6
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 7.1e-61 238.4 256 52.3
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 3.5e-60 236.1 284 47.2
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 3.9e-59 232.6 267 47.6
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 7.3e-58 228.4 261 49.4
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 8.1e-57 224.9 260 47.3
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 1.1e-56 224.6 268 45.1
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 1.1e-56 224.6 262 46.2
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 2.4e-56 223.4 262 50.0
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 4.0e-56 222.6 243 49.0
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 3.4e-55 219.5 268 44.4
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 7.6e-55 218.4 269 42.8
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.9e-55 218.0 269 45.0
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.9e-55 218.0 269 45.0
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.9e-55 218.0 269 45.0
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.8e-54 216.1 127 76.4
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 8.4e-54 214.9 260 45.0
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.1e-53 214.5 256 44.9
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 1.1e-53 214.5 261 44.4
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.1e-53 214.5 260 45.0
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 1.1e-53 214.5 261 44.4
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 2.4e-53 213.4 152 64.5
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 3.2e-53 213.0 260 44.6
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.6e-52 210.7 156 61.5
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 2.5e-50 203.4 267 46.8
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 3.3e-50 203.0 260 42.7
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 7.3e-50 201.8 246 46.3
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 9.6e-50 201.4 256 42.2
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 3.6e-49 199.5 246 45.9
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.4e-47 193.0 263 40.3
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 9.9e-47 191.4 261 45.6
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 1.3e-46 191.0 155 58.7
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.7e-46 190.7 291 38.5
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 1.4e-45 187.6 263 41.4
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 5.4e-45 185.7 275 36.7
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 7.1e-45 185.3 157 54.8
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 2.7e-44 183.3 159 53.5
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 3.0e-43 179.9 318 35.2
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 8.7e-43 178.3 255 40.8
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.1e-42 177.9 262 38.2
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 1.5e-42 177.6 150 56.0
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 7.4e-42 175.3 265 39.2
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 2.1e-41 173.7 270 40.4
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 9.0e-40 168.3 261 39.1
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.2e-39 167.9 268 37.7
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 9.9e-39 164.9 191 47.1
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 4.9e-38 162.5 279 34.4
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 8.4e-38 161.8 185 49.7
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 8.4e-38 161.8 296 35.5
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.5e-34 151.0 165 47.3
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 2.5e-34 150.2 172 47.7
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.3e-34 149.8 148 47.3
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 1.3e-33 147.9 164 43.3
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.3e-33 147.9 172 47.1
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 2.8e-33 146.7 186 47.3
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 2.8e-33 146.7 172 47.7
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 3.7e-33 146.4 173 50.3
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 6.2e-33 145.6 173 49.7
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 8.2e-33 145.2 172 48.3
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 1.1e-32 144.8 173 48.6
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 2.4e-32 143.7 211 39.3
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 4.0e-32 142.9 170 48.8
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.2e-31 141.4 169 49.1
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 1.5e-31 141.0 191 46.1
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 3.8e-30 136.3 170 47.6
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 8.4e-30 135.2 173 44.5
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 3.2e-29 133.3 173 45.7
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 6.0e-28 129.0 261 33.0
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 7.9e-28 128.6 165 47.9
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.5e-26 124.4 160 44.4
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.6e-25 120.9 284 29.9
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 2.6e-23 113.6 111 51.4
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 3.8e-22 109.8 212 32.1
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 6.1e-20 102.4 185 34.6
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.1e-18 98.2 66 63.6
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 1.7e-09 67.8 70 40.0
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.2e-07 61.6 69 44.9
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 7.7e-07 58.9 72 38.9
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 2.2e-06 57.4 66 34.8


User provided reference genes

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