Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1137400 Malus domestica HOM05D000257 ORTHO05D007882 8.4e-44 179.9 85 100.0
MD14G1152200 Malus domestica HOM05D000257 ORTHO05D007882 3.3e-24 114.8 72 81.9
Prupe.5G147200 Prunus persica HOM05D000257 ORTHO05D007882 9.6e-24 113.2 72 77.8
BcaB08g36462 Brassica carinata HOM05D000257 ORTHO05D007882 1.6e-18 95.9 72 68.1
A10p18750 Brassica napus HOM05D000257 ORTHO05D007882 1.6e-18 95.9 72 68.1
RcHm_v2.0_Chr3g0476651 Rosa chinensis HOM05D000257 ORTHO05D007882 2.1e-18 95.5 73 69.9
Thhalv10013576m.g Eutrema salsugineum HOM05D000257 ORTHO05D007882 2.7e-18 95.1 72 65.3
FAN09G1036 Fragaria x ananassa HOM05D000257 ORTHO05D007882 2.7e-18 95.1 73 68.5
Dinv16884 Davidia involucrata HOM05D000257 ORTHO05D007882 3.5e-18 94.7 83 55.4
FvH4_6g20760 Fragaria vesca HOM05D000257 ORTHO05D007882 4.6e-18 94.4 73 68.5
Carub.0006s1961 Capsella rubella HOM05D000257 ORTHO05D007882 7.9e-18 93.6 72 63.9
BcaC04g19529 Brassica carinata HOM05D000257 ORTHO05D007882 1.3e-17 92.8 72 65.3
FAN14G5499 Fragaria x ananassa HOM05D000257 ORTHO05D007882 1.3e-17 92.8 73 67.1
ClCG05G015930 Citrullus lanatus HOM05D000257 ORTHO05D007882 1.8e-17 92.4 72 62.5
C09p54700 Brassica napus HOM05D000257 ORTHO05D007882 2.3e-17 92.0 72 65.3
BolC9t58334H Brassica oleracea HOM05D000257 ORTHO05D007882 2.3e-17 92.0 72 65.3
CiPaw.13G146200 Carya illinoinensis HOM05D000257 ORTHO05D007882 3.0e-17 91.7 73 64.4
Ciclev10008231m.g Citrus clementina HOM05D000257 ORTHO05D007882 3.0e-17 91.7 72 62.5
Hma1.2p1_0208F.1_g088160 Hydrangea macrophylla HOM05D000257 ORTHO05D007882 3.0e-17 91.7 84 59.5
AT5G21970 Arabidopsis thaliana HOM05D000257 ORTHO05D007882 3.9e-17 91.3 72 63.9
BraA10t43955Z Brassica rapa HOM05D000257 ORTHO05D007882 3.9e-17 91.3 68 64.7
CANSAT56G0635 Cannabis sativa HOM05D000257 ORTHO05D007882 5.1e-17 90.9 72 66.7
FAN05G1677 Fragaria x ananassa HOM05D000257 ORTHO05D007882 5.1e-17 90.9 73 67.1
FAN05G1719 Fragaria x ananassa HOM05D000257 ORTHO05D007882 5.1e-17 90.9 73 67.1
ClCG09G003310 Citrullus lanatus HOM05D000257 ORTHO05D007882 6.7e-17 90.5 72 61.1
Aa31LG1G13450 Aethionema arabicum HOM05D000257 ORTHO05D007882 1.1e-16 89.7 72 62.5
DCAR_004761 Daucus carota HOM05D000257 ORTHO05D007882 1.1e-16 89.7 82 54.9
ECA234G2471 Erigeron canadensis HOM05D000257 ORTHO05D007882 1.1e-16 89.7 60 61.7
MELO3C016928.2 Cucumis melo HOM05D000257 ORTHO05D007882 1.5e-16 89.4 68 60.3
CsaV3_4G036200 Cucumis sativus L. HOM05D000257 ORTHO05D007882 1.5e-16 89.4 68 63.2
CARHR191560 Cardamine hirsuta HOM05D000257 ORTHO05D007882 1.9e-16 89.0 71 59.2
FAN02G1740 Fragaria x ananassa HOM05D000257 ORTHO05D007882 2.5e-16 88.6 73 64.4
Sp6g23220 Schrenkiella parvula HOM05D000257 ORTHO05D007882 2.5e-16 88.6 68 61.8
Lj7P526T74 Lonicera japonica HOM05D000257 ORTHO05D007882 3.3e-16 88.2 84 57.1
TAR626G1570 Trochodendron aralioides HOM05D000257 ORTHO05D007882 3.3e-16 88.2 84 54.8
TAR626G0079 Trochodendron aralioides HOM05D000257 ORTHO05D007882 4.3e-16 87.8 84 54.8
TAR730G0001 Trochodendron aralioides HOM05D000257 ORTHO05D007882 4.3e-16 87.8 84 54.8
AL6G32930 Arabidopsis lyrata HOM05D000257 ORTHO05D007882 5.7e-16 87.4 68 61.8
CSS0008745 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D007882 7.4e-16 87.0 84 53.6
CSS0019170 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D007882 7.4e-16 87.0 84 53.6
Sed0001456 Sechium edule HOM05D000257 ORTHO05D007882 7.4e-16 87.0 72 61.1
TWI63G0681 Tripterygium wilfordii HOM05D000257 ORTHO05D007882 9.7e-16 86.7 68 63.2
Aqoxy1G01909 Aquilegia oxysepala HOM05D000257 ORTHO05D007882 2.8e-15 85.1 84 56.0
Aqoxy7G00996 Aquilegia oxysepala HOM05D000257 ORTHO05D007882 2.8e-15 85.1 84 56.0
Actinidia14134 Actinidia chinensis HOM05D000257 ORTHO05D007882 3.7e-15 84.7 60 66.7
Rhsim01G0002400 Rhododendron simsii HOM05D000257 ORTHO05D007882 6.3e-15 84.0 68 60.3
Atru.chr7.1816 Acer truncatum HOM05D000257 ORTHO05D007882 1.1e-14 83.2 68 57.4
Lsat_1_v5_gn_4_37701 Lactuca sativa HOM05D000257 ORTHO05D007882 1.1e-14 83.2 60 61.7
Oeu056508.1 Olea europaea HOM05D000257 ORTHO05D007882 1.4e-14 82.8 62 61.3
vmacro23463 Vaccinium macrocarpon HOM05D000257 ORTHO05D007882 3.1e-14 81.6 68 60.3
PGSC0003DMG400009010 Solanum tuberosum HOM05D000257 ORTHO05D007882 5.3e-14 80.9 61 57.4
Duzib168G0022 Durio zibethinus HOM05D000257 ORTHO05D007882 6.9e-14 80.5 72 59.7
COL.COLO4_21166 Corchorus olitorius HOM05D000257 ORTHO05D007882 9.0e-14 80.1 72 59.7
Haze_18327 Corylus avellana HOM05D000257 ORTHO05D007882 9.0e-14 80.1 75 57.3
Gohir.A06G080900 Gossypium hirsutum HOM05D000257 ORTHO05D007882 9.0e-14 80.1 75 52.0
HanXRQChr06g0180321 Helianthus annuus HOM05D000257 ORTHO05D007882 9.0e-14 80.1 60 58.3
HanXRQChr14g0455241 Helianthus annuus HOM05D000257 ORTHO05D007882 9.0e-14 80.1 60 58.3
Potri.006G218100 Populus trichocarpa HOM05D000257 ORTHO05D007882 9.0e-14 80.1 68 55.9
Thecc.09G066100 Theobroma cacao HOM05D000257 ORTHO05D007882 9.0e-14 80.1 72 61.1
MSTRG.6232 Avicennia marina HOM05D000257 ORTHO05D007882 1.5e-13 79.3 74 58.1
Sabra06G0168100 Salix brachista HOM05D000257 ORTHO05D007882 1.5e-13 79.3 68 55.9
Sopen01g031210 Solanum pennellii HOM05D000257 ORTHO05D007882 1.5e-13 79.3 61 55.7
Gohir.D06G080400 Gossypium hirsutum HOM05D000257 ORTHO05D007882 2.0e-13 79.0 72 56.9
Gorai.010G093700 Gossypium raimondii HOM05D000257 ORTHO05D007882 2.0e-13 79.0 72 56.9
CAN.G100.79 Capsicum annuum HOM05D000257 ORTHO05D007882 2.6e-13 78.6 73 54.8
Nitab4.5_0000055g0230 Nicotiana tabacum HOM05D000257 ORTHO05D007882 2.6e-13 78.6 73 56.2
Nitab4.5_0011152g0010 Nicotiana tabacum HOM05D000257 ORTHO05D007882 2.6e-13 78.6 73 56.2
Manes.03G056000 Manihot esculenta HOM05D000257 ORTHO05D007882 4.5e-13 77.8 73 63.0
Migut.J01495 Erythranthe guttata HOM05D000257 ORTHO05D007882 7.7e-13 77.0 64 59.4
Aqoxy6G01879 Aquilegia oxysepala HOM05D000257 ORTHO05D007882 1.3e-12 76.3 84 51.2
Solyc01g079430.2 Solanum lycopersicum HOM05D000257 ORTHO05D007882 1.7e-12 75.9 61 52.5
Nitab4.5_0006606g0010 Nicotiana tabacum HOM05D000257 ORTHO05D007882 2.2e-12 75.5 73 54.8
GSVIVG01035500001 Vitis vinifera HOM05D000257 ORTHO05D007882 2.2e-12 75.5 74 60.8
PGR119G0414 Punica granatum HOM05D000257 ORTHO05D007882 3.8e-12 74.7 71 56.3
SGA_v2.0_scaffold237G43836 Striga asiatica HOM05D000257 ORTHO05D007882 3.8e-12 74.7 62 53.2
Peaxi162Scf01054g00016 Petunia axillaris HOM05D000257 ORTHO05D007882 6.5e-12 73.9 73 52.1
MBI16_g25135_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D007882 1.4e-11 72.8 60 61.7
Cc06_g13110 Coffea canephora HOM05D000257 ORTHO05D007882 1.9e-11 72.4 87 50.6
unitig_37.g12760 Utricularia gibba HOM05D000257 ORTHO05D007882 2.5e-11 72.0 62 56.5
arahy.Tifrunner.gnm1.ann1.W22R0G Arachis hypogaea HOM05D000257 ORTHO05D007882 7.2e-11 70.5 74 54.1
Sc02g0004200 Simmondsia chinensis HOM05D000257 ORTHO05D007882 9.4e-11 70.1 84 42.9
CDE05G3218 Ceratophyllum demersum HOM05D000257 ORTHO05D007882 1.2e-10 69.7 85 48.2
Psat5g035840 Pisum sativum HOM05D000257 ORTHO05D007882 1.2e-10 69.7 76 47.4
SHI17973 Sapria himalayana HOM05D000257 ORTHO05D007882 1.6e-10 69.3 75 49.3
Lj1g0007895 Lotus japonicus HOM05D000257 ORTHO05D007882 4.6e-10 67.8 77 51.9
Ah.04g159340 Amaranthus hybridus HOM05D000257 ORTHO05D007882 7.9e-10 67.0 73 47.9
Glyma.08G106300 Glycine max HOM05D000257 ORTHO05D007882 7.9e-10 67.0 73 50.7
TPR.G21442 Trifolium pratense HOM05D000257 ORTHO05D007882 7.9e-10 67.0 78 46.2
AUR62037994 Chenopodium quinoa HOM05D000257 ORTHO05D007882 2.3e-09 65.5 87 46.0
AUR62013550 Chenopodium quinoa HOM05D000257 ORTHO05D007882 3.9e-09 64.7 85 44.7
Medtr0153s0070 Medicago truncatula HOM05D000257 ORTHO05D007882 3.9e-09 64.7 70 47.1
Medtr3g105530 Medicago truncatula HOM05D000257 ORTHO05D007882 3.9e-09 64.7 70 47.1
Os11g0544300 Oryza sativa ssp. japonica HOM05D000257 ORTHO05D007882 5.1e-09 64.3 64 46.9
VMungo0647G2131 Vigna mungo HOM05D000257 ORTHO05D007882 8.8e-09 63.5 75 49.3
Lalb_Chr11g0063401 Lupinus albus HOM05D000257 ORTHO05D007882 1.1e-08 63.2 60 48.3
Hund17425 Selenicereus undatus HOM05D000257 ORTHO05D007882 1.1e-08 63.2 62 51.6
Os03g0181400 Oryza sativa ssp. japonica HOM05D000257 ORTHO05D007882 1.5e-08 62.8 81 48.1
CDE05G1599 Ceratophyllum demersum HOM05D000257 ORTHO05D007882 1.9e-08 62.4 67 53.7
Phvul.001G029400 Phaseolus vulgaris HOM05D000257 ORTHO05D007882 2.5e-08 62.0 74 51.4
EL10Ac1g01520 Beta vulgaris HOM05D000257 ORTHO05D007882 3.3e-08 61.6 90 41.1
HPP92_005718 Vanilla planifolia HOM05D000257 ORTHO05D007882 3.3e-08 61.6 68 45.6
Zm00001eb006010 Zea mays HOM05D000257 ORTHO05D007882 6.3e-07 57.4 60 43.3
Ca_15802_v3 Cicer arietinum L. HOM05D000257 ORTHO05D007882 2.4e-06 55.5 76 40.8
ATR0681G227 Amborella trichopoda HOM05D000257 ORTHO05D007882 5.3e-06 54.3 44 65.9


User provided reference genes

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