Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 0.0e+00 1107.4 556 100.0
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 4.5e-287 990.7 529 94.1
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 3.5e-247 858.2 561 79.3
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 4.9e-225 784.6 557 72.2
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 9.2e-224 780.4 557 71.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.0e-222 775.4 557 71.1
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.5e-221 772.3 540 73.5
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.4e-218 761.5 528 72.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.6e-215 753.1 519 72.3
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 2.2e-209 732.6 552 67.6
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 8.3e-209 730.7 563 67.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.9e-208 729.6 541 69.5
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 2.4e-208 729.2 529 69.6
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.0e-206 723.8 531 70.4
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.7e-206 723.0 529 67.9
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 3.9e-206 721.8 510 70.8
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-205 720.3 517 71.2
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.1e-204 714.1 548 67.3
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.1e-203 713.8 555 68.5
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.1e-203 713.8 514 68.5
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.5e-202 709.9 549 67.6
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.6e-202 709.1 554 66.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 5.8e-202 708.0 489 74.0
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 9.9e-202 707.2 539 66.2
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 9.9e-202 707.2 530 67.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 4.1e-200 701.8 525 69.5
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 5.4e-200 701.4 510 70.0
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 5.4e-200 701.4 534 65.9
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.5e-199 698.7 531 67.6
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.0e-198 697.2 600 61.0
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.3e-198 696.0 515 68.7
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.5e-197 693.3 535 67.5
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.6e-196 689.9 553 63.7
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.6e-196 689.9 554 65.3
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.4e-195 686.8 532 67.3
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.4e-195 686.0 534 66.9
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 3.1e-195 685.6 539 66.2
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 8.9e-195 684.1 528 66.9
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 2.0e-194 682.9 552 64.3
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 3.4e-194 682.2 553 63.3
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.8e-194 681.4 558 65.4
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.3e-193 680.2 541 64.7
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.5e-189 666.0 579 61.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.6e-189 664.1 548 64.2
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 4.8e-188 661.8 532 64.8
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 8.1e-188 661.0 588 59.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.0e-187 658.7 572 59.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.5e-186 656.8 556 62.8
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.7e-185 653.3 546 62.5
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.9e-185 651.7 590 58.5
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.4e-185 651.4 536 63.8
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 8.4e-185 651.0 536 63.8
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 8.4e-185 651.0 556 62.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.1e-184 650.6 575 59.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.1e-184 650.6 548 61.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.4e-184 650.2 571 58.5
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 2.4e-184 649.4 529 64.3
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.7e-183 646.0 536 63.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 3.5e-183 645.6 546 61.7
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 6.2e-180 634.8 645 56.4
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 8.1e-180 634.4 594 57.7
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.1e-179 634.0 469 66.1
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.5e-178 630.2 451 72.5
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.5e-178 630.2 584 57.4
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 3.8e-177 625.5 562 59.8
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.1e-176 624.0 534 62.0
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 3.2e-176 622.5 592 57.6
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.2e-176 622.5 552 58.9
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.5e-175 619.0 551 60.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 6.0e-175 618.2 533 61.7
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.8e-174 616.7 526 61.4
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.5e-173 612.8 543 59.9
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.3e-169 600.5 576 57.1
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.7e-169 600.1 543 59.7
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 8.4e-169 597.8 559 57.4
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 8.7e-166 587.8 526 59.1
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 5.7e-165 585.1 588 55.6
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.3e-164 583.9 526 58.7
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.3e-164 581.6 570 56.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.5e-162 577.0 556 56.1
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.6e-162 576.2 532 57.9
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 3.4e-162 575.9 532 57.5
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 4.5e-162 575.5 534 59.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.9e-161 572.8 529 56.7
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.9e-161 572.8 521 58.3
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.8e-161 572.4 482 60.4
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 6.5e-161 571.6 533 57.4
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.1e-160 570.9 515 57.9
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.5e-160 569.7 538 55.0
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.6e-159 567.0 519 58.0
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.6e-159 567.0 522 57.5
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 7.9e-159 564.7 528 57.0
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.3e-158 563.9 534 57.3
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.9e-158 562.4 364 71.7
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.9e-158 562.4 593 53.3
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.6e-156 557.0 525 56.6
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.4e-155 553.9 533 55.5
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.2e-154 550.8 545 56.0
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.5e-154 550.4 556 52.9
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.0e-154 550.1 536 54.1
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 5.0e-153 545.4 490 56.7
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.6e-151 540.4 555 52.1
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.0e-149 533.5 435 62.1
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 8.2e-148 528.1 519 55.3
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 8.2e-148 528.1 369 68.6
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.2e-146 524.2 574 50.5
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.5e-144 516.5 389 63.8
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.6e-143 513.8 515 53.0
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 6.3e-140 501.9 564 49.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.9e-138 495.4 522 53.1
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.3e-137 494.2 469 55.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.7e-137 493.8 557 49.2
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.2e-137 493.4 298 76.5
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.5e-136 490.7 485 53.6
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 3.6e-135 486.1 513 49.5
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.0e-134 484.6 321 75.4
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.2e-130 471.1 512 49.8
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.5e-130 469.2 314 69.7
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 8.5e-129 464.9 322 68.3
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 9.4e-128 461.5 489 52.8
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 8.0e-127 458.4 531 51.0
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.5e-125 454.1 482 52.5
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 5.7e-125 452.2 411 58.6
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.2e-120 435.3 269 74.7
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 9.2e-115 418.3 592 41.6
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.0e-114 417.2 562 42.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 3.5e-114 416.4 592 41.4
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.9e-113 413.3 360 53.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.8e-113 412.9 563 41.9
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.8e-113 412.9 563 41.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 5.0e-113 412.5 348 55.7
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 6.6e-113 412.1 354 54.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.5e-112 411.0 591 40.6
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 7.3e-112 408.7 608 40.8
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.2e-111 407.9 360 53.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 5.2e-110 402.5 619 39.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 8.9e-110 401.7 348 54.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.2e-109 401.4 491 45.8
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 4.4e-109 399.4 576 42.0
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 4.4e-109 399.4 576 42.0
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.9e-108 396.0 281 63.3
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 2.4e-107 393.7 570 40.9
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 2.4e-107 393.7 570 40.9
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 5.0e-105 386.0 411 49.6
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.3e-104 382.9 453 47.9
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.5e-101 374.4 298 56.7
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.2e-99 366.7 227 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 7.0e-99 365.5 520 40.4
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.7e-92 344.4 208 76.0
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 6.4e-92 342.4 393 49.6
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.4e-91 339.3 208 74.5
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.8e-84 316.6 297 50.5
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.0e-77 294.3 291 59.1
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 6.4e-76 289.3 575 37.6
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.9e-67 261.2 344 48.5
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 5.3e-62 243.0 269 56.5
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.0e-58 229.6 559 33.5
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 9.6e-56 222.2 325 43.7
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 6.9e-54 216.1 602 30.9
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 5.8e-53 213.0 163 62.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.3e-44 185.3 124 72.6
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 9.4e-43 179.1 257 37.4
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 3.7e-39 167.2 133 57.9
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.8e-38 164.9 102 74.5
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 9.4e-35 152.5 83 85.5
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.4e-29 134.0 82 73.2
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 3.8e-28 130.6 133 49.6
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.2e-26 125.6 67 86.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 5.2e-25 120.2 65 86.2
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.0e-24 118.2 92 58.7
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 5.7e-24 116.7 260 33.5
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.7e-18 97.8 231 35.5
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.4e-17 95.5 233 33.0
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 1.3e-12 79.0 210 35.2
Aa31LG3G7440 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.2e-07 61.6 63 52.4
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 2.8e-07 61.2 352 24.1


User provided reference genes

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