Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 7.0e-229 797.0 411 100.0
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 6.4e-182 641.0 412 84.0
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 1.4e-173 613.2 419 77.8
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 8.2e-161 570.9 411 75.9
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 1.1e-157 560.5 410 71.7
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 1.1e-157 560.5 411 71.3
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 9.3e-157 557.4 411 71.8
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 2.7e-156 555.8 411 71.5
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 1.1e-154 550.4 416 70.0
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 6.3e-153 544.7 410 72.7
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.3e-150 537.0 419 70.4
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 2.9e-150 535.8 413 68.5
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 5.0e-150 535.0 404 74.0
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 3.9e-147 525.4 434 66.1
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 5.1e-147 525.0 422 67.8
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 2.5e-146 522.7 417 71.7
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 2.5e-146 522.7 415 68.2
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 4.3e-146 521.9 416 70.2
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 9.7e-146 520.8 418 68.2
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 1.7e-145 520.0 412 72.1
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 4.8e-145 518.5 415 68.2
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 8.2e-145 517.7 424 69.1
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 3.1e-144 515.8 415 71.3
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.5e-143 513.5 416 66.3
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.0e-143 513.1 415 66.3
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 2.0e-143 513.1 415 71.1
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 3.4e-143 512.3 415 69.2
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 1.0e-142 510.8 401 72.8
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.7e-142 510.0 414 71.3
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.7e-142 510.0 420 65.2
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 2.2e-142 509.6 411 70.1
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.4e-141 506.9 423 66.7
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 1.4e-141 506.9 418 69.4
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.9e-141 506.5 414 66.4
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 7.2e-141 504.6 421 68.4
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.6e-140 503.4 418 65.3
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 2.7e-140 502.7 413 70.0
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 4.7e-140 501.9 411 70.1
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 1.8e-139 500.0 426 64.6
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 1.8e-139 500.0 416 69.2
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 5.1e-139 498.4 432 63.4
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 4.4e-138 495.4 414 68.8
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 9.7e-138 494.2 418 67.2
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 3.7e-137 492.3 422 65.4
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 3.7e-137 492.3 408 64.5
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 4.8e-137 491.9 394 70.3
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 4.1e-136 488.8 393 71.2
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 5.3e-136 488.4 406 64.8
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 7.0e-136 488.0 408 69.6
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 7.0e-136 488.0 415 63.6
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 7.0e-136 488.0 457 58.6
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 4.5e-135 485.3 412 64.1
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 1.0e-134 484.2 423 64.5
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 1.3e-134 483.8 405 64.4
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.0e-131 474.2 402 61.7
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 5.2e-131 471.9 423 60.3
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 5.2e-131 471.9 422 64.5
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 6.7e-131 471.5 402 62.4
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 1.5e-130 470.3 414 61.4
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 5.7e-130 468.4 411 61.8
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 5.7e-130 468.4 423 64.8
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 6.3e-129 464.9 435 63.9
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 1.2e-127 460.7 423 62.9
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 3.5e-127 459.1 413 62.0
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 4.5e-127 458.8 371 66.3
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 3.8e-126 455.7 380 69.2
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 3.8e-126 455.7 408 61.3
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 1.1e-125 454.1 420 59.3
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 2.5e-125 453.0 413 60.5
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 4.7e-124 448.7 422 59.2
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 8.8e-123 444.5 424 59.7
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.2e-122 444.1 430 60.9
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 5.7e-122 441.8 429 59.2
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 5.7e-122 441.8 429 59.2
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 7.5e-122 441.4 379 63.9
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 9.8e-122 441.0 423 63.8
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.7e-121 439.1 390 61.3
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 4.8e-121 438.7 428 59.1
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 4.8e-121 438.7 428 59.1
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 8.3e-121 438.0 421 62.9
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 8.3e-121 438.0 395 63.0
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 1.1e-120 437.6 420 62.6
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 2.4e-120 436.4 530 54.0
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 2.4e-120 436.4 403 62.5
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.1e-120 436.0 403 62.5
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 4.1e-120 435.6 413 60.5
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.6e-119 433.7 422 57.8
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 1.0e-118 431.0 427 60.0
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 1.0e-118 431.0 416 61.5
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 1.7e-118 430.3 414 61.6
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 1.7e-118 430.3 414 61.6
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 2.2e-118 429.9 416 62.5
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 8.5e-118 427.9 405 59.5
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 1.1e-117 427.6 437 58.4
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-117 427.2 408 61.5
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 1.5e-117 427.2 316 73.4
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 2.5e-117 426.4 394 59.4
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 2.5e-117 426.4 483 55.1
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 9.4e-117 424.5 414 59.2
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 1.2e-116 424.1 418 61.0
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 1.2e-116 424.1 420 61.9
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 3.6e-116 422.5 438 59.1
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 8.0e-116 421.4 340 66.2
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 1.5e-114 417.2 416 59.6
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 2.0e-114 416.8 410 59.8
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 7.5e-114 414.8 360 61.7
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 3.7e-113 412.5 373 64.3
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.3e-113 411.8 425 56.9
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 6.3e-113 411.8 354 68.6
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 4.1e-112 409.1 379 59.9
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 7.0e-112 408.3 399 59.4
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 2.3e-110 403.3 300 71.3
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 1.9e-109 400.2 394 58.4
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 3.0e-107 392.9 408 52.9
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 2.2e-97 360.1 402 53.2
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 5.0e-94 349.0 459 47.1
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.6e-92 344.0 389 51.7
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.3e-91 340.1 376 52.7
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 3.1e-91 339.7 407 53.1
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 4.0e-91 339.3 386 57.3
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 4.9e-89 332.4 344 52.0
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.1e-83 314.7 180 81.7
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 1.1e-83 314.7 169 85.2
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.1e-83 314.7 336 50.6
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.9e-80 303.9 341 49.3
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 3.0e-78 296.6 294 59.2
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 1.9e-77 293.9 378 47.6
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 4.3e-77 292.7 323 49.5
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 2.0e-74 283.9 303 60.4
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 1.1e-72 278.1 297 61.3
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 1.7e-65 254.2 139 85.6
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 3.8e-65 253.1 290 54.1
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 2.2e-57 227.3 124 84.7
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 9.6e-53 211.8 113 85.0
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.3e-52 211.5 163 70.6
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.0e-51 205.3 251 54.6
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 6.0e-47 192.6 112 75.0
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 3.7e-44 183.3 335 34.6
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 1.3e-41 174.9 91 86.8
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 9.3e-40 168.7 154 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 1.0e-30 138.7 273 36.6
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 5.3e-27 126.3 106 64.2
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 2.0e-18 97.8 126 46.8
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.0e-14 85.5 79 49.4


User provided reference genes

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