Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 0.0e+00 1317.0 664 100.0
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 6.0e-222 774.6 741 60.9
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 3.5e-137 493.0 719 46.2
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.2e-130 469.9 716 44.8
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 7.8e-129 465.3 718 44.3
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 2.1e-126 457.2 718 44.3
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.7e-123 447.6 722 43.6
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 5.8e-116 422.5 716 42.2
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.1e-74 285.4 547 37.8
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 6.5e-67 259.6 606 33.5
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.7e-59 235.0 791 29.8
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.1e-57 226.5 464 36.0
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 9.5e-42 176.0 462 32.7
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 7.0e-37 159.8 537 29.2
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 1.9e-34 151.8 473 30.4
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-32 145.6 595 27.6
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.7e-31 140.2 591 27.9
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 1.6e-28 132.1 756 26.1
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 4.3e-26 124.0 570 27.0
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 6.2e-25 120.2 563 25.9
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 2.3e-24 118.2 494 28.7
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 2.6e-23 114.8 399 30.1
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 4.4e-23 114.0 462 28.4
Gohir.D12G243700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 7.5e-23 113.2 677 23.3
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 8.3e-22 109.8 562 25.6
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 2.4e-21 108.2 552 25.5
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 7.0e-21 106.7 492 25.4
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 9.2e-21 106.3 489 26.0
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 2.7e-20 104.8 428 27.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 3.5e-20 104.4 446 26.0
Gorai.008G261200 Gossypium raimondii HOM05D011672 ORTHO05D011012 4.6e-20 104.0 783 23.1
Gohir.A12G242700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 2.3e-19 101.7 730 24.7
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 3.9e-19 100.9 711 25.9
PGR031G2170 Punica granatum HOM05D013249 ORTHO05D011012 8.6e-19 99.8 333 30.3
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 1.5e-18 99.0 399 25.6
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 1.9e-18 98.6 828 23.6
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 4.3e-18 97.4 465 27.1
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.2e-17 95.9 557 24.6
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.1e-17 95.1 502 25.7
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.6e-17 94.4 233 27.9
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 3.6e-17 94.4 510 25.3
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 4.7e-17 94.0 538 23.4
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 1.1e-16 92.8 284 26.4
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.8e-16 92.0 363 28.1
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 3.1e-16 91.3 363 28.4
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 8.9e-16 89.7 481 24.7
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 8.9e-16 89.7 316 27.8
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.2e-15 89.4 196 30.6
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 1.5e-15 89.0 672 23.7
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 7.5e-15 86.7 528 22.7
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 9.9e-15 86.3 366 27.9
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 2.2e-14 85.1 580 22.4
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 4.9e-14 84.0 621 23.0
Atru.chr9.1832 Acer truncatum HOM05D011672 ORTHO05D011012 8.3e-14 83.2 129 40.3
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 8.3e-14 83.2 413 24.2
Medtr2g016640 Medicago truncatula HOM05D013241 ORTHO05D011012 8.3e-14 83.2 399 26.3
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.4e-13 82.4 563 21.7
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 2.4e-13 81.6 556 22.3
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 3.2e-13 81.3 415 24.8
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 7.1e-13 80.1 459 22.9
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 9.2e-13 79.7 238 27.3
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 9.2e-13 79.7 624 24.4
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.6e-12 79.0 473 23.0
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.1e-12 78.6 431 25.3
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 3.5e-12 77.8 528 24.1
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 6.0e-12 77.0 240 26.2
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.7e-11 75.5 258 23.3
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.7e-11 75.5 530 22.8
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.7e-11 75.5 201 24.4
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 2.3e-11 75.1 218 25.7
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.3e-11 75.1 493 23.7
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.3e-11 75.1 421 26.6
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.3e-11 75.1 368 25.0
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 3.9e-11 74.3 208 26.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.9e-11 74.3 561 24.1
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 5.1e-11 73.9 554 22.2
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 8.6e-11 73.2 256 25.0
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.5e-10 72.4 212 26.4
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.9e-10 72.0 549 23.5
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 3.3e-10 71.2 426 23.5
Aa31LG9G11580 Aethionema arabicum HOM05D010823 ORTHO05D012736 4.3e-10 70.9 407 25.8
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.6e-10 70.5 669 22.6
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 9.5e-10 69.7 214 24.8
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.2e-09 69.3 360 21.9
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.2e-09 69.3 519 23.5
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 1.6e-09 68.9 396 25.5
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.6e-09 68.9 196 25.5
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 2.1e-09 68.6 391 22.8
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 2.8e-09 68.2 201 26.9
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 3.6e-09 67.8 191 27.2
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.6e-09 67.8 669 22.4
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 3.6e-09 67.8 197 28.9
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 4.7e-09 67.4 348 25.3
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 4.7e-09 67.4 369 26.3
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 6.2e-09 67.0 200 25.5
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.4e-08 65.9 202 27.7
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.8e-08 65.5 203 27.1
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.8e-08 65.5 203 27.1
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.4e-08 65.1 199 28.6
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 3.1e-08 64.7 657 23.0
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 3.1e-08 64.7 440 22.7
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.0e-08 64.3 198 24.7
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 4.0e-08 64.3 222 25.7
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 8.9e-08 63.2 175 26.9
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 8.9e-08 63.2 299 25.4
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 8.9e-08 63.2 205 27.3
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.2e-07 62.8 200 27.0
THA.LOC104815458 Tarenaya hassleriana HOM05D010823 ORTHO05D012736 1.2e-07 62.8 345 25.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.5e-07 62.4 208 26.9
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 2.0e-07 62.0 228 25.0
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.6e-07 61.6 191 25.7
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 2.6e-07 61.6 309 24.6
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 3.4e-07 61.2 204 26.0
CARHR256170 Cardamine hirsuta HOM05D010823 ORTHO05D012736 3.4e-07 61.2 322 24.5
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 3.4e-07 61.2 179 27.9
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 4.4e-07 60.8 280 24.6
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 5.8e-07 60.5 259 24.7
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 5.8e-07 60.5 226 26.1
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 7.6e-07 60.1 377 22.0
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 7.6e-07 60.1 206 27.2
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 9.9e-07 59.7 175 26.3
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.3e-06 59.3 206 26.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.3e-06 59.3 203 24.6
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.7e-06 58.9 209 25.4
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 1.7e-06 58.9 209 25.4
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 1.7e-06 58.9 340 25.3
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.7e-06 58.9 209 25.4
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.7e-06 58.9 199 26.6
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.7e-06 58.9 232 23.3
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 2.2e-06 58.5 379 23.0
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 2.9e-06 58.2 205 25.9
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.9e-06 58.2 80 45.0
Atru.chr9.1833 Acer truncatum HOM05D011672 ORTHO05D011012 6.4e-06 57.0 83 34.9
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 6.4e-06 57.0 395 22.8
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 8.4e-06 56.6 244 25.8
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 8.4e-06 56.6 384 21.1
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 8.4e-06 56.6 85 42.4


User provided reference genes

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