Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.6e-98 362.8 190 100.0
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 3.4e-93 345.1 191 95.3
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 3.3e-88 328.6 191 90.6
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.3e-88 328.2 191 89.0
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 9.5e-88 327.0 191 88.5
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 3.6e-87 325.1 188 90.4
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 4.7e-87 324.7 191 89.5
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 4.0e-86 321.6 189 88.9
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.7e-84 315.1 190 87.4
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 5.0e-81 304.7 191 84.3
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 6.6e-81 304.3 191 84.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 8.6e-81 303.9 192 83.3
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 5.6e-80 301.2 191 82.7
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 7.3e-80 300.8 191 83.2
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 2.1e-79 299.3 190 83.2
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 2.8e-79 298.9 189 82.5
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.8e-79 298.9 180 85.6
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 6.2e-79 297.7 192 82.8
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 8.1e-79 297.4 190 81.1
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.1e-78 297.0 190 80.5
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 2.3e-78 295.8 188 82.4
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 4.0e-78 295.0 175 86.9
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 5.2e-78 294.7 191 81.7
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 5.2e-78 294.7 198 78.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 6.8e-78 294.3 195 80.5
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.5e-77 293.1 191 81.2
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 2.6e-77 292.4 191 82.2
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.4e-77 291.6 192 81.8
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 4.4e-77 291.6 187 81.3
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 5.8e-77 291.2 188 82.4
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 7.5e-77 290.8 195 79.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.3e-76 290.0 191 78.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.7e-76 289.7 186 82.8
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.7e-76 289.7 182 83.5
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 2.9e-76 288.9 185 81.1
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.7e-76 288.5 185 81.6
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 4.9e-76 288.1 188 81.4
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.9e-75 286.2 191 78.5
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.4e-75 284.6 194 77.3
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 6.0e-74 281.2 191 77.5
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.0e-73 280.4 191 76.4
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.0e-73 280.4 192 78.6
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.1e-73 278.1 192 76.6
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 5.1e-73 278.1 189 78.3
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 6.6e-73 277.7 189 77.8
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 8.6e-73 277.3 176 81.8
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.1e-72 276.9 192 76.6
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.5e-72 276.6 194 76.3
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.9e-72 276.2 189 77.8
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.9e-72 276.2 191 77.5
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.9e-72 276.2 198 72.7
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.9e-72 276.2 198 72.7
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.3e-72 275.4 192 76.0
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.3e-72 275.0 201 72.6
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.3e-72 275.0 188 78.2
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 7.3e-72 274.2 202 71.3
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 7.3e-72 274.2 202 71.3
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.3e-72 274.2 202 71.3
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.8e-71 272.3 192 75.5
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 2.8e-71 272.3 187 77.0
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 2.8e-71 272.3 191 75.9
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 3.6e-71 271.9 188 77.7
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 4.7e-71 271.6 209 70.8
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 8.1e-71 270.8 155 87.7
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-70 270.4 201 72.1
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.4e-70 270.0 188 75.5
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.4e-70 270.0 159 84.9
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 2.3e-70 269.2 190 75.8
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 3.1e-70 268.9 194 73.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 3.1e-70 268.9 192 75.0
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 3.1e-70 268.9 192 75.5
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 5.2e-70 268.1 192 74.5
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 8.9e-70 267.3 192 74.5
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 8.9e-70 267.3 193 76.7
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 1.2e-69 266.9 189 74.1
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 3.4e-69 265.4 196 71.9
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 5.8e-69 264.6 194 74.2
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 9.9e-69 263.8 189 74.1
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 9.9e-69 263.8 195 71.8
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.7e-68 261.9 192 73.4
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 6.4e-68 261.2 177 76.8
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 8.4e-68 260.8 173 79.8
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.4e-67 260.0 163 78.5
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.9e-67 259.6 171 79.5
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 3.2e-67 258.8 192 74.0
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 4.1e-67 258.5 205 67.3
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 5.4e-67 258.1 189 73.5
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 7.1e-67 257.7 196 68.4
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.6e-66 256.5 198 67.2
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.6e-66 256.5 194 70.6
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.1e-66 256.1 188 72.9
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.1e-66 256.1 188 72.9
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.7e-66 255.8 189 72.0
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.5e-66 255.4 188 72.3
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.6e-66 255.0 192 71.4
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 7.8e-66 254.2 191 71.2
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.7e-65 253.1 189 70.9
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.7e-65 253.1 189 71.4
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.7e-65 253.1 189 71.4
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.7e-65 253.1 168 78.0
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 5.1e-65 251.5 164 78.0
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.5e-64 250.0 153 83.7
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.5e-64 250.0 184 69.6
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.9e-64 249.6 186 73.1
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 3.3e-64 248.8 196 70.4
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 7.3e-64 247.7 209 66.5
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 9.6e-64 247.3 190 68.9
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.8e-63 245.7 192 71.9
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 2.8e-63 245.7 187 71.7
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 8.1e-63 244.2 158 77.8
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.8e-62 243.0 191 70.7
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.8e-62 243.0 194 69.1
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 2.4e-62 242.7 169 73.4
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.2e-61 240.4 189 69.8
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.5e-61 240.0 156 78.2
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 3.4e-61 238.8 167 75.4
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 4.4e-61 238.4 193 66.8
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.3e-60 236.9 257 54.9
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.7e-60 236.5 168 75.0
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 2.9e-60 235.7 149 81.9
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.4e-59 232.6 166 74.1
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 6.0e-58 228.0 156 73.7
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.0e-57 227.3 197 61.4
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.7e-57 226.5 168 72.6
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 4.3e-56 221.9 194 63.4
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 4.3e-56 221.9 181 67.4
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.2e-53 213.8 191 63.9
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 3.4e-53 212.2 191 62.8
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 2.1e-50 203.0 164 70.1
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 3.9e-49 198.7 167 65.9
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.3e-48 195.7 131 79.4
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 4.8e-47 191.8 147 67.3
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 6.2e-47 191.4 233 52.4
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.4e-46 190.3 150 68.0
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.3e-44 183.7 111 81.1
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.1e-43 180.6 190 57.4
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.7e-42 176.0 131 68.7
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.1e-40 170.6 104 79.8
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.5e-40 169.5 179 55.3
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.2e-37 160.6 156 51.3
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.0e-37 159.8 130 63.8
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 5.8e-37 158.3 144 52.1
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-36 157.5 131 66.4
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.9e-36 156.0 131 64.9
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.5e-36 154.8 131 64.9
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-34 150.6 131 64.9
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 2.7e-34 149.4 154 51.3
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.5e-34 149.1 82 87.8
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.3e-33 147.1 187 51.9
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 4.3e-32 142.1 152 51.3
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 5.7e-32 141.7 120 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.3e-31 140.6 172 43.0
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.1e-31 139.8 175 42.3
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.4e-30 136.3 134 53.7
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.1e-26 121.7 121 57.9
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.5e-19 99.8 87 64.4
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 5.1e-17 92.0 59 76.3
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 2.0e-13 80.1 79 63.3
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 4.5e-13 79.0 175 40.0
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.6e-10 69.3 103 46.6
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 6.3e-07 58.5 43 62.8
RcHm_v2.0_Chr2g0098501 Rosa chinensis HOM05D004525 ORTHO05D005295 7.0e-06 55.1 87 40.2


User provided reference genes

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