Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.4e-204 716.1 368 100.0
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.4e-172 609.8 350 91.4
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.9e-172 609.4 357 86.3
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 7.3e-161 570.9 350 85.1
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 2.4e-159 565.8 350 87.1
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 7.6e-158 560.8 354 82.8
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.1e-151 540.4 412 70.6
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 6.4e-149 531.2 356 79.5
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 8.4e-149 530.8 358 77.7
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 5.4e-148 528.1 354 80.2
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 7.1e-148 527.7 355 79.4
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 9.3e-148 527.3 356 79.2
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 2.7e-147 525.8 356 78.4
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 6.0e-147 524.6 356 78.1
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.3e-146 523.5 356 78.1
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 1.7e-146 523.1 356 78.9
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 3.9e-146 521.9 357 78.4
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 8.7e-146 520.8 350 79.7
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.7e-146 520.8 350 79.7
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.3e-145 518.8 350 80.0
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 5.6e-145 518.1 356 79.2
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.1e-144 516.2 356 78.7
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.1e-144 514.2 350 79.4
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.4e-143 513.5 356 77.8
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.8e-143 513.1 356 76.7
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 2.4e-143 512.7 356 77.5
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.4e-143 512.7 355 77.7
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 3.1e-143 512.3 357 77.9
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 5.8e-142 508.1 354 76.3
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 9.9e-142 507.3 361 76.5
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 9.9e-142 507.3 350 78.9
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.6e-139 500.0 356 77.0
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.1e-139 499.6 356 75.6
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 3.0e-138 495.7 372 73.1
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.1e-137 493.8 357 75.1
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.3e-137 491.9 356 75.0
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 3.7e-136 488.8 369 71.3
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 6.2e-136 488.0 350 75.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.4e-135 486.9 356 75.6
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 3.1e-135 485.7 356 74.4
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.1e-135 485.7 395 68.9
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.2e-134 483.8 350 76.3
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 7.6e-134 481.1 355 73.5
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 7.6e-134 481.1 356 73.3
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.3e-133 480.3 356 74.2
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 4.2e-132 475.3 356 72.8
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.1e-131 473.0 355 73.5
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 6.0e-131 471.5 355 73.2
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 6.0e-131 471.5 356 74.4
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 7.9e-131 471.1 356 73.3
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.0e-130 470.7 330 77.0
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.3e-130 469.5 356 73.9
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 5.1e-130 468.4 356 71.9
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 1.5e-129 466.8 356 72.8
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.9e-129 466.5 356 71.9
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.1e-128 463.0 352 71.6
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.1e-128 463.0 352 72.2
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.8e-128 462.6 353 71.1
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 4.8e-128 461.8 355 72.4
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 8.2e-128 461.1 357 72.0
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 8.2e-128 461.1 355 70.7
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.8e-127 459.9 363 70.5
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.2e-126 457.2 363 70.0
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.6e-126 456.1 363 70.2
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.6e-126 456.1 355 71.0
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.6e-126 456.1 351 71.5
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 3.4e-126 455.7 355 70.7
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 3.4e-126 455.7 355 72.1
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-125 454.1 363 70.0
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.0e-125 454.1 355 70.7
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.9e-125 452.6 355 70.7
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 3.8e-125 452.2 357 69.2
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 3.8e-125 452.2 356 71.3
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 4.9e-125 451.8 353 68.8
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 4.9e-125 451.8 355 70.4
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 6.5e-125 451.4 351 70.7
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 8.4e-125 451.1 354 69.8
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 8.4e-125 451.1 350 72.0
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 3.2e-124 449.1 357 69.7
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 4.2e-124 448.7 357 68.9
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 2.1e-123 446.4 357 69.2
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 6.0e-123 444.9 356 70.8
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 2.3e-122 443.0 355 69.0
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.7e-122 441.4 363 68.3
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.7e-122 441.0 363 68.3
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 1.5e-121 440.3 357 68.3
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 3.3e-121 439.1 350 69.4
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 9.7e-121 437.6 357 67.5
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.3e-120 437.2 357 67.5
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.3e-120 437.2 357 67.5
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.7e-120 435.6 361 67.9
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 3.1e-119 432.6 352 67.6
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 3.1e-119 432.6 352 67.6
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 3.1e-119 432.6 352 67.6
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 5.3e-119 431.8 357 67.5
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 6.9e-119 431.4 391 66.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.0e-118 429.9 361 66.2
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 5.9e-118 428.3 355 66.8
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.1e-116 424.1 356 66.3
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.1e-116 424.1 350 68.3
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.5e-116 422.9 354 65.5
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 1.2e-115 420.6 378 61.9
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.7e-113 411.8 360 65.6
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.7e-113 411.0 360 65.6
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.7e-112 410.2 356 65.2
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 2.8e-112 409.5 350 66.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.8e-111 406.8 376 62.8
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 2.4e-111 406.4 321 70.1
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 6.9e-111 404.8 324 64.2
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.2e-108 395.6 356 64.0
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.2e-107 394.0 356 64.0
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.7e-104 383.6 350 64.9
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 3.7e-104 382.5 424 55.2
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 8.5e-101 371.3 363 60.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.1e-100 370.9 600 43.7
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.4e-100 370.5 365 56.4
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.6e-97 359.8 337 60.8
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.2e-94 350.9 337 61.1
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 3.5e-94 349.4 255 76.1
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 5.0e-93 345.5 365 54.8
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 3.2e-92 342.8 279 63.8
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 4.2e-92 342.4 313 62.6
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.1e-91 340.1 255 73.3
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.1e-87 324.7 237 75.5
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 2.1e-83 313.5 313 59.4
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 6.3e-80 302.0 259 64.1
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.8e-74 283.9 362 47.2
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 5.2e-74 282.3 361 42.9
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 7.5e-73 278.5 224 70.5
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.1e-68 264.6 451 38.6
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.2e-65 254.6 244 63.9
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 2.0e-49 200.7 132 76.5
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.5e-49 198.7 153 68.0
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.5e-44 183.7 142 66.9
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 3.3e-44 183.3 179 57.0
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.3e-44 182.2 142 66.2
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.7e-43 179.5 142 64.1
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-39 167.5 169 56.8
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 3.5e-38 163.3 447 29.3
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.7e-37 158.7 135 61.5
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-36 157.5 135 61.5
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.6e-36 155.2 95 83.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-33 148.3 171 51.5
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.1e-31 139.0 129 59.7
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 8.1e-27 125.6 106 57.5
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-26 124.8 75 77.3
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 5.8e-25 119.4 68 88.2
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 3.5e-22 110.2 82 64.6
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.8e-18 97.8 327 27.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.8e-18 97.8 122 50.0
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 1.2e-14 85.1 55 74.5
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.2e-14 85.1 57 75.4
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.3e-12 77.0 71 63.4
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.1e-11 74.3 52 73.1
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 3.7e-11 73.6 123 42.3


User provided reference genes

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