Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 0.0e+00 1120.5 575 100.0
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 8.9e-198 694.1 657 61.0
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 8.2e-151 538.1 723 47.7
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 1.3e-140 504.2 721 45.2
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.6e-138 496.1 671 46.8
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.3e-137 493.4 649 48.4
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 1.8e-113 414.1 684 41.1
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 1.1e-110 404.8 571 45.4
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 9.5e-107 391.7 557 43.4
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 3.5e-101 373.2 614 41.7
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.3e-100 371.3 681 38.3
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 2.0e-96 357.5 563 42.1
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 1.6e-93 347.8 469 45.6
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 3.5e-93 346.7 555 42.0
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 4.3e-91 339.7 375 48.8
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 4.0e-89 333.2 466 41.8
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 1.5e-88 331.3 519 40.3
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 5.8e-88 329.3 768 33.7
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 1.9e-86 324.3 397 46.3
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 7.1e-86 322.4 463 42.3
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 1.5e-83 314.7 590 38.1
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 1.2e-82 311.6 566 39.6
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 1.6e-82 311.2 542 38.7
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.7e-82 309.7 547 39.5
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 6.2e-82 309.3 544 40.1
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 1.1e-81 308.5 593 37.4
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 3.1e-81 307.0 443 44.0
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 5.2e-81 306.2 426 44.1
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 1.5e-80 304.7 458 41.0
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 2.6e-80 303.9 420 43.6
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 2.6e-80 303.9 462 41.1
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 2.2e-79 300.8 460 41.1
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 2.9e-79 300.4 456 41.2
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 4.2e-78 296.6 371 45.3
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 2.1e-77 294.3 384 44.3
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.6e-77 293.1 617 35.3
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 7.8e-77 292.4 589 37.9
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 2.3e-76 290.8 591 35.5
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 3.9e-76 290.0 477 38.8
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 3.9e-76 290.0 596 36.2
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 6.6e-76 289.3 414 41.3
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 4.3e-75 286.6 534 39.1
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 1.6e-74 284.6 375 44.0
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 1.6e-74 284.6 589 37.4
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 9.0e-73 278.9 356 44.7
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 1.5e-72 278.1 418 42.8
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.6e-72 277.3 625 34.4
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.6e-72 275.8 468 37.4
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 1.3e-71 275.0 477 39.4
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 1.7e-71 274.6 414 41.8
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 1.7e-63 248.1 415 40.7
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 4.2e-62 243.4 401 40.9
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.5e-62 243.0 503 35.2
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 1.5e-59 235.0 429 36.1
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 2.1e-58 231.1 571 33.8
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 3.4e-56 223.8 432 37.0
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 7.6e-56 222.6 252 47.6
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 1.7e-55 221.5 279 44.1
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 6.5e-55 219.5 422 35.8
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 1.1e-54 218.8 291 44.0
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.4e-54 218.4 273 44.3
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 2.5e-54 217.6 292 45.5
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.2e-53 215.3 286 44.8
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 1.0e-52 212.2 512 32.2
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 1.8e-52 211.5 438 35.8
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 5.1e-52 209.9 419 37.2
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.8e-50 204.1 648 30.2
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 1.4e-49 201.8 470 34.3
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.4e-49 201.8 411 35.8
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.3e-44 185.3 180 52.2
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 5.1e-44 183.3 231 45.5
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.7e-44 182.6 251 40.2
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.7e-42 177.2 197 48.2
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 2.5e-38 164.5 471 30.6
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 3.0e-36 157.5 464 29.5
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.5e-35 155.2 154 54.5
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 2.6e-35 154.5 269 33.5
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 7.4e-35 152.9 137 56.2
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 6.3e-34 149.8 103 75.7
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 6.3e-34 149.8 247 38.9
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 1.1e-33 149.1 233 38.2
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 2.0e-32 144.8 270 37.4
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.9e-30 138.3 201 39.3
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 1.1e-27 129.0 116 56.0
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 4.4e-27 127.1 455 25.7
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 5.7e-27 126.7 287 31.4
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.4e-27 126.3 169 44.4
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-26 125.6 169 45.0
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.7e-26 124.0 169 45.0
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.2e-26 122.9 159 44.7
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 3.1e-25 120.9 164 44.5
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 8.5e-23 112.8 501 26.3
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.5e-22 112.1 139 41.7
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 2.5e-22 111.3 165 43.0
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.5e-22 111.3 136 46.3
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 5.5e-22 110.2 150 44.7
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 1.2e-21 109.0 161 43.5
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 2.1e-21 108.2 142 45.1
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 4.7e-21 107.1 163 45.4
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 6.1e-21 106.7 168 41.1
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.3e-20 104.8 103 52.4
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 4.0e-20 104.0 151 41.7
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.7e-20 103.2 103 51.5
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 1.2e-19 102.4 152 44.1
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 2.0e-19 101.7 141 44.7
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 4.4e-19 100.5 212 33.0
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 5.7e-19 100.1 70 65.7
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 7.5e-19 99.8 141 44.0
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.8e-18 97.8 87 55.2
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 8.2e-18 96.3 141 43.3
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 1.4e-17 95.5 139 41.7
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 7.0e-17 93.2 108 47.2
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-16 92.0 99 47.5
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 3.8e-15 87.4 324 29.0
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.2e-12 77.0 80 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 4.4e-11 73.9 204 31.9
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 5.7e-11 73.6 84 45.2
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.1e-09 67.4 35 91.4
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 9.1e-09 66.2 90 42.2
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 1.6e-08 65.5 69 47.8
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 4.5e-08 63.9 91 41.8
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.5e-06 56.2 56 57.1
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 9.5e-06 56.2 77 37.7


User provided reference genes

Program Settings