Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.2e-138 496.5 246 100.0
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.9e-117 426.0 246 86.6
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.2e-108 394.0 249 77.9
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 7.4e-101 370.9 243 75.7
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.7e-100 369.8 238 76.1
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-99 367.1 243 75.3
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.3e-99 364.8 249 73.1
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-96 357.1 253 71.9
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.1e-96 357.1 243 74.5
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.6e-95 352.1 243 72.0
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 5.1e-94 348.2 244 71.7
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.1e-93 347.1 187 90.9
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.3e-91 338.2 243 68.3
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 9.1e-91 337.4 239 72.0
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 7.7e-90 334.3 238 70.2
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.7e-89 333.2 243 67.5
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.8e-89 332.0 243 68.7
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.5e-89 331.3 240 70.0
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.9e-88 329.7 240 70.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.5e-88 329.3 247 66.0
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 7.2e-88 327.8 243 66.3
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 9.4e-88 327.4 247 68.8
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 9.4e-88 327.4 245 68.2
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.1e-87 324.7 241 66.8
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.0e-87 324.3 241 66.8
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.4e-86 323.6 234 69.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.8e-86 323.2 239 67.8
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 2.3e-86 322.8 234 67.9
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 2.3e-86 322.8 239 68.6
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 4.0e-86 322.0 220 71.8
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 3.3e-85 318.9 248 65.3
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 7.5e-85 317.8 234 69.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.4e-83 312.8 245 68.2
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.4e-83 312.8 245 68.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 3.5e-82 308.9 229 69.0
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.9e-82 308.1 222 69.4
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 7.7e-82 307.8 233 68.2
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.7e-81 306.6 237 65.8
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 2.2e-81 306.2 249 63.1
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.9e-81 305.8 234 65.0
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.1e-80 303.9 239 66.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.5e-80 303.5 229 67.7
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.5e-80 303.5 229 68.6
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.5e-80 302.8 229 68.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 2.5e-80 302.8 236 65.3
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.5e-80 302.8 245 63.7
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 3.2e-80 302.4 240 62.5
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 5.5e-80 301.6 243 64.6
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 5.5e-80 301.6 243 64.6
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 2.7e-79 299.3 237 64.1
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 4.7e-79 298.5 247 63.6
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.0e-78 297.4 241 62.2
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-78 297.0 243 65.0
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 3.0e-78 295.8 234 63.7
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 4.0e-78 295.4 236 63.6
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 4.0e-78 295.4 250 62.0
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 5.2e-78 295.0 242 62.8
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 5.2e-78 295.0 241 64.3
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 8.8e-78 294.3 199 71.4
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-77 293.9 244 62.7
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.5e-77 293.5 231 63.6
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.5e-77 293.5 241 65.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.0e-77 293.1 236 63.1
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.6e-77 292.7 246 61.4
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 3.4e-77 292.4 244 63.1
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 4.4e-77 292.0 236 64.0
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 7.5e-77 291.2 244 61.9
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 7.5e-77 291.2 238 62.2
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 9.8e-77 290.8 236 65.3
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.3e-76 290.4 236 64.0
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.7e-76 290.0 236 65.3
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.8e-76 289.3 175 78.3
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 3.7e-76 288.9 232 65.1
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 4.8e-76 288.5 236 63.1
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 6.3e-76 288.1 238 60.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 8.3e-76 287.7 267 56.9
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.1e-75 285.8 178 75.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.1e-75 285.8 224 66.1
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 9.1e-75 284.3 278 56.8
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 7.7e-74 281.2 240 62.1
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.7e-73 280.0 237 61.2
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.9e-72 276.6 189 70.9
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.2e-72 274.6 184 70.1
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.6e-71 273.5 184 70.1
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.1e-71 273.1 182 70.3
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 6.1e-71 271.6 187 71.7
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 8.0e-71 271.2 227 61.7
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 8.0e-71 271.2 236 60.2
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 8.0e-71 271.2 236 60.2
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 8.0e-71 271.2 244 55.3
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.0e-70 270.8 239 57.3
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.0e-70 270.8 236 58.5
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.0e-70 270.8 192 68.8
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.4e-70 270.4 175 75.4
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.4e-70 270.4 242 56.2
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.0e-70 269.2 187 71.7
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 5.2e-70 268.5 230 58.3
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 8.8e-70 267.7 215 64.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.0e-69 266.5 246 55.7
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 2.0e-69 266.5 234 59.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.6e-69 266.2 208 64.9
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 2.6e-69 266.2 232 56.9
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 3.4e-69 265.8 235 59.1
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 3.4e-69 265.8 234 54.3
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.4e-69 265.4 234 59.4
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 5.7e-69 265.0 234 59.0
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 9.8e-69 264.2 234 56.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.2e-68 263.1 188 69.7
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 2.4e-67 259.6 233 55.4
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.2e-66 257.3 243 57.6
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.6e-66 256.9 203 65.0
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.0e-66 256.5 215 62.3
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 2.7e-66 256.1 233 57.1
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 2.7e-66 256.1 222 60.8
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 3.5e-66 255.8 237 55.3
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 5.9e-66 255.0 222 59.9
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 5.9e-66 255.0 243 52.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.0e-65 254.2 161 76.4
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.0e-65 254.2 183 66.7
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 2.9e-65 252.7 188 67.6
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 3.8e-65 252.3 190 65.8
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.1e-64 250.8 177 71.2
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.5e-64 250.4 183 65.0
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.1e-63 245.0 221 58.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 8.0e-63 244.6 183 63.9
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 6.8e-62 241.5 186 63.4
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.0e-61 240.0 183 63.4
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 3.4e-61 239.2 183 63.4
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 3.4e-61 239.2 183 63.4
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.2e-60 236.5 183 63.9
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 6.4e-60 235.0 192 61.5
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-59 233.8 182 64.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 7.0e-59 231.5 234 54.7
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.6e-58 228.8 167 64.7
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.6e-58 228.8 333 41.1
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 7.8e-58 228.0 189 62.4
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.9e-57 225.7 161 67.1
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 5.0e-57 225.3 178 57.3
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.9e-56 223.4 188 63.3
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.0e-54 217.6 230 52.2
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.4e-53 212.6 126 76.2
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 3.7e-52 209.1 214 55.6
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 3.7e-52 209.1 214 55.6
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.9e-52 208.8 148 66.2
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.1e-51 205.7 137 67.2
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.1e-51 205.7 170 62.4
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.0e-50 203.4 137 70.1
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 3.6e-47 192.6 119 68.9
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 4.1e-43 179.1 125 68.0
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.8e-39 166.4 166 50.6
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 7.3e-32 141.7 130 56.9
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.4e-30 137.5 217 40.1
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.4e-22 110.9 111 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.9e-20 103.2 101 48.5
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 5.4e-19 99.0 109 48.6
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.1e-18 97.1 67 70.1
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.5e-16 90.9 172 32.6
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.1e-14 84.7 66 59.1
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 9.0e-14 81.6 48 68.8


User provided reference genes

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