Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 1.6e-36 155.6 78 100.0
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 4.0e-32 141.0 73 94.5
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 2.2e-27 125.2 82 81.7
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.5e-27 123.6 79 81.0
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 3.2e-26 121.3 79 79.7
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.2e-25 119.4 79 78.5
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-25 119.4 79 78.5
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.7e-25 117.5 76 78.9
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.4e-23 110.9 73 78.1
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 6.3e-22 107.1 77 71.4
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.8e-21 105.5 77 68.8
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 9.1e-21 103.2 78 70.5
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.1e-21 103.2 77 70.1
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 9.1e-21 103.2 77 70.1
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.6e-20 102.4 77 66.2
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.7e-20 101.7 81 69.1
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.7e-20 101.7 77 67.5
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.7e-20 101.7 81 70.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.5e-20 101.3 75 69.3
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 7.7e-20 100.1 77 67.5
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.7e-19 99.0 78 69.2
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.7e-19 99.0 82 67.1
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.3e-19 98.6 77 67.5
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.3e-19 98.6 77 67.5
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.3e-19 98.6 77 64.9
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.8e-19 97.8 78 65.4
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.8e-19 97.8 85 61.2
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 5.0e-19 97.4 77 64.9
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 8.6e-19 96.7 73 65.8
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 8.6e-19 96.7 73 65.8
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 8.6e-19 96.7 75 68.0
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-18 96.3 70 70.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.5e-18 95.9 80 65.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.9e-18 95.5 79 62.0
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 2.5e-18 95.1 78 65.4
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.5e-18 95.1 78 66.7
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.3e-18 94.7 81 61.7
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 4.2e-18 94.4 78 66.7
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 7.2e-18 93.6 75 64.0
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 9.5e-18 93.2 80 62.5
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.1e-17 92.0 76 67.1
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.8e-17 91.7 81 61.7
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.8e-17 91.7 83 60.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 2.8e-17 91.7 83 60.2
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.6e-17 91.3 78 64.1
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.6e-17 91.3 77 63.6
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.7e-17 90.9 77 62.3
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 6.1e-17 90.5 75 62.7
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 6.1e-17 90.5 80 57.5
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 6.1e-17 90.5 80 60.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 8.0e-17 90.1 82 56.1
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.3e-16 88.6 76 63.2
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.0e-16 88.2 78 61.5
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.0e-16 88.2 82 58.5
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 6.8e-16 87.0 77 61.0
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 8.9e-16 86.7 71 62.0
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.0e-15 85.5 81 60.5
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.6e-15 85.1 85 58.8
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.6e-15 85.1 75 60.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.4e-15 84.3 80 56.2
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 5.7e-15 84.0 79 55.7
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 5.7e-15 84.0 79 55.7
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.5e-15 83.6 78 55.1
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 7.5e-15 83.6 75 60.0
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.5e-15 83.6 77 59.7
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.5e-15 83.6 77 59.7
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 7.5e-15 83.6 77 58.4
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.3e-14 82.8 78 55.1
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.3e-14 82.8 85 56.5
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.3e-14 82.8 83 54.2
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.3e-14 82.8 77 59.7
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.3e-14 82.8 93 47.3
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.3e-14 82.8 76 57.9
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.2e-14 82.0 78 56.4
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 2.2e-14 82.0 77 57.1
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.7e-14 81.3 75 56.0
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.7e-14 81.3 77 57.1
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.7e-14 81.3 78 56.4
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 4.9e-14 80.9 80 56.2
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.1e-13 79.7 81 56.8
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.1e-13 79.7 78 52.6
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.1e-13 79.7 82 53.7
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.4e-13 79.3 78 53.8
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.4e-13 79.3 79 54.4
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.8e-13 79.0 80 51.2
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.4e-13 78.6 88 53.4
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.2e-13 78.2 79 54.4
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-13 78.2 74 56.8
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 3.2e-13 78.2 84 56.0
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.2e-13 78.2 80 53.8
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.1e-13 77.8 78 55.1
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 5.4e-13 77.4 78 56.4
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.4e-13 77.4 88 53.4
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 5.4e-13 77.4 79 57.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 9.2e-13 76.6 78 53.8
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.2e-12 76.3 86 51.2
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.6e-12 75.9 81 51.9
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.6e-12 75.9 78 52.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.6e-12 75.9 91 51.6
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.7e-12 75.1 79 55.7
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.5e-12 74.7 82 53.7
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.6e-12 74.3 92 53.3
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.6e-12 74.3 73 57.5
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 5.9e-12 73.9 79 53.2
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.8e-12 73.6 81 50.6
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.0e-11 73.2 79 53.2
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 1.0e-11 73.2 76 59.2
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-11 72.8 79 53.2
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.7e-11 72.4 73 50.7
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.7e-11 72.4 87 51.7
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.7e-11 72.4 77 51.9
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 2.9e-11 71.6 79 51.9
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.9e-11 71.2 79 48.1
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.9e-11 71.2 82 50.0
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.9e-11 71.2 82 53.7
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 5.0e-11 70.9 80 51.2
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.0e-11 70.9 81 49.4
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.6e-11 70.5 85 49.4
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 6.6e-11 70.5 74 51.4
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 8.6e-11 70.1 76 53.9
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 8.6e-11 70.1 74 54.1
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.6e-11 70.1 81 54.3
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.1e-10 69.7 83 50.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.1e-10 69.7 75 54.7
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.5e-10 69.3 86 45.3
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-10 68.9 77 51.9
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-10 68.9 67 53.7
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.9e-10 68.9 67 53.7
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.3e-10 67.8 77 50.6
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.3e-10 67.8 93 48.4
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.3e-10 67.8 74 51.4
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 5.6e-10 67.4 76 52.6
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 5.6e-10 67.4 76 50.0
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 7.3e-10 67.0 76 51.3
FAN04G1321 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.3e-10 67.0 49 73.5
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 7.3e-10 67.0 84 51.2
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.5e-10 66.6 74 51.4
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 9.5e-10 66.6 76 51.3
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.2e-09 66.2 81 50.6
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.6e-09 65.9 76 51.3
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.6e-09 65.9 84 42.9
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.1e-09 65.5 98 43.9
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.8e-09 65.1 79 48.1
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 2.8e-09 65.1 84 48.8
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 2.8e-09 65.1 82 48.8
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 2.8e-09 65.1 74 48.6
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.8e-09 65.1 77 49.4
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 3.6e-09 64.7 77 49.4
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 6.2e-09 63.9 82 50.0
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 8.0e-09 63.5 78 51.3
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 8.0e-09 63.5 74 47.3
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.0e-08 63.2 75 50.7
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.8e-08 62.4 82 48.8
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.8e-08 62.4 80 48.8
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.3e-08 62.0 81 45.7
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 3.1e-08 61.6 80 46.2
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.0e-07 58.9 79 46.8
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.6e-07 58.5 78 46.2
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.6e-07 58.5 95 42.1
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 4.4e-07 57.8 81 45.7
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 1.3e-06 56.2 79 45.6
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.3e-06 56.2 81 43.2
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 1.7e-06 55.8 57 56.1


User provided reference genes

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