Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1092500 Malus domestica HOM05D006267 ORTHO05D007490 0.0e+00 1340.1 691 100.0
MD14G1113000 Malus domestica HOM05D006267 ORTHO05D007490 0.0e+00 1111.3 695 83.7
Prupe.5G107200 Prunus persica HOM05D006267 ORTHO05D007490 6.4e-243 844.3 572 76.7
RcHm_v2.0_Chr7g0196491 Rosa chinensis HOM05D006267 ORTHO05D007490 6.9e-229 797.7 678 64.7
FvH4_5g03290 Fragaria vesca HOM05D006267 ORTHO05D007490 2.3e-216 756.1 653 63.7
FAN18G3550 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.1e-210 737.3 653 62.9
FAN08G1104 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.6e-209 733.4 720 59.0
FAN04G2714 Fragaria x ananassa HOM05D006267 ORTHO05D007490 2.3e-208 729.6 679 61.1
FAN04G3088 Fragaria x ananassa HOM05D006267 ORTHO05D007490 4.8e-206 721.8 703 59.2
FAN13G1859 Fragaria x ananassa HOM05D006267 ORTHO05D007490 9.1e-205 717.6 699 59.7
FAN13G1356 Fragaria x ananassa HOM05D006267 ORTHO05D007490 5.5e-202 708.4 699 59.4
QL02p033236 Quercus lobata HOM05D006267 ORTHO05D007490 6.8e-168 595.1 697 51.1
Cfa012253 Carpinus fangiana HOM05D006267 ORTHO05D007490 4.3e-162 575.9 717 50.5
COL.COLO4_08352 Corchorus olitorius HOM05D006267 ORTHO05D007490 1.1e-157 561.2 694 48.7
GSVIVG01019426001 Vitis vinifera HOM05D006267 ORTHO05D007490 3.9e-155 552.7 706 48.4
CANSAT21G1484 Cannabis sativa HOM05D006267 ORTHO05D007490 9.5e-154 548.1 701 50.1
Thecc.03G287200 Theobroma cacao HOM05D006267 ORTHO05D007490 2.1e-153 547.0 698 48.6
Atru.chr9.2105 Acer truncatum HOM05D006267 ORTHO05D007490 1.3e-147 527.7 695 47.2
Dinv37589 Davidia involucrata HOM05D006267 ORTHO05D007490 1.5e-143 514.2 703 45.2
Duzib084G0031 Durio zibethinus HOM05D006267 ORTHO05D007490 1.5e-143 514.2 650 48.3
Ciclev10019222m.g Citrus clementina HOM05D006267 ORTHO05D007490 3.6e-137 493.0 698 44.4
Dinv38895 Davidia involucrata HOM05D006267 ORTHO05D007490 2.9e-134 483.4 596 48.0
CiPaw.12G088700 Carya illinoinensis HOM05D006267 ORTHO05D007490 5.4e-133 479.2 601 49.1
Cpa.g.sc201.8 Carica papaya HOM05D006267 ORTHO05D007490 9.3e-133 478.4 678 46.2
Gohir.A11G023100 Gossypium hirsutum HOM05D006267 ORTHO05D007490 2.7e-132 476.9 582 49.5
Glyma.08G018700 Glycine max HOM05D006267 ORTHO05D007490 3.5e-132 476.5 698 43.7
Gorai.007G024600 Gossypium raimondii HOM05D006267 ORTHO05D007490 3.5e-132 476.5 582 49.3
Gohir.D11G022800 Gossypium hirsutum HOM05D006267 ORTHO05D007490 1.3e-131 474.6 582 49.3
Lj4g0011337 Lotus japonicus HOM05D006267 ORTHO05D007490 1.5e-130 471.1 706 43.2
CSS0029775 Camellia sinensis var. sinensis HOM05D006267 ORTHO05D007490 1.9e-130 470.7 711 42.9
ClCG07G007820 Citrullus lanatus HOM05D006267 ORTHO05D007490 3.3e-130 469.9 694 44.5
arahy.Tifrunner.gnm1.ann1.BRCM5A Arachis hypogaea HOM05D006267 ORTHO05D007490 2.1e-129 467.2 697 44.2
Potri.001G098500 Populus trichocarpa HOM05D006267 ORTHO05D007490 3.6e-129 466.5 659 45.7
arahy.Tifrunner.gnm1.ann1.SWZD22 Arachis hypogaea HOM05D006267 ORTHO05D007490 4.8e-129 466.1 697 44.0
Glyma.05G212200 Glycine max HOM05D006267 ORTHO05D007490 1.7e-126 457.6 697 42.0
Potri.003G133100 Populus trichocarpa HOM05D006267 ORTHO05D007490 1.7e-126 457.6 664 44.9
Manes.02G016400 Manihot esculenta HOM05D006267 ORTHO05D007490 4.9e-126 456.1 545 49.2
Manes.01G056900 Manihot esculenta HOM05D006267 ORTHO05D007490 6.4e-126 455.7 695 43.9
VMungo0251G1048 Vigna mungo HOM05D006267 ORTHO05D007490 3.2e-125 453.4 697 42.0
Ca_10954_v3 Cicer arietinum L. HOM05D006267 ORTHO05D007490 7.9e-124 448.7 632 46.0
Duzib205G1874 Durio zibethinus HOM05D006267 ORTHO05D007490 1.8e-123 447.6 699 42.1
CsaV3_4G006140 Cucumis sativus L. HOM05D006267 ORTHO05D007490 1.9e-122 444.1 702 43.7
Phvul.002G293500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 1.6e-121 441.0 699 41.5
Actinidia33723 Actinidia chinensis HOM05D006267 ORTHO05D007490 3.4e-119 433.3 673 42.5
Lalb_Chr09g0333071 Lupinus albus HOM05D006267 ORTHO05D007490 3.8e-118 429.9 693 42.3
TPR.G12935 Trifolium pratense HOM05D006267 ORTHO05D007490 1.9e-117 427.6 652 42.5
Sabra03G0095400 Salix brachista HOM05D006267 ORTHO05D007490 1.8e-115 421.0 577 46.1
Sed0011828 Sechium edule HOM05D006267 ORTHO05D007490 2.3e-115 420.6 689 42.4
Psat7g029320 Pisum sativum HOM05D006267 ORTHO05D007490 3.9e-115 419.9 609 44.5
Lalb_Chr05g0224451 Lupinus albus HOM05D006267 ORTHO05D007490 5.1e-115 419.5 694 41.1
Medtr8g098995 Medicago truncatula HOM05D006267 ORTHO05D007490 6.7e-115 419.1 612 43.3
Hma1.2p1_0216F.1_g091140 Hydrangea macrophylla HOM05D006267 ORTHO05D007490 3.3e-114 416.8 586 44.4
TAR629G1352 Trochodendron aralioides HOM05D006267 ORTHO05D007490 3.3e-114 416.8 706 41.2
Nn1g01698 Nelumbo nucifera HOM05D006267 ORTHO05D007490 9.0e-112 408.7 727 40.3
Sabra01G0073800 Salix brachista HOM05D006267 ORTHO05D007490 9.0e-112 408.7 675 42.7
Actinidia27358 Actinidia chinensis HOM05D006267 ORTHO05D007490 2.6e-111 407.1 587 43.6
MELO3C016335.2 Cucumis melo HOM05D006267 ORTHO05D007490 3.4e-111 406.8 700 42.9
Lj2A177G41 Lonicera japonica HOM05D006267 ORTHO05D007490 2.7e-108 397.1 587 45.3
TAR375G0718 Trochodendron aralioides HOM05D006267 ORTHO05D007490 1.1e-106 391.7 678 40.1
Haze_08744 Corylus avellana HOM05D006267 ORTHO05D007490 4.3e-106 389.8 699 41.3
AUR62010761 Chenopodium quinoa HOM05D006267 ORTHO05D007490 3.7e-105 386.7 711 38.5
TAR374G1011 Trochodendron aralioides HOM05D006267 ORTHO05D007490 5.9e-103 379.4 797 36.0
Duzib068G0865 Durio zibethinus HOM05D006267 ORTHO05D007490 2.9e-102 377.1 703 37.7
EL10Ac5g12844 Beta vulgaris HOM05D006267 ORTHO05D007490 3.2e-101 373.6 704 38.4
Sc01g0009910 Simmondsia chinensis HOM05D006267 ORTHO05D007490 7.9e-100 369.0 699 37.9
Eucgr.E00783 Eucalyptus grandis HOM05D006267 ORTHO05D007490 4.3e-98 363.2 633 41.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.7e-97 361.3 697 38.2
Cc08_g15330 Coffea canephora HOM05D006267 ORTHO05D007490 3.4e-95 353.6 547 40.0
PGR042G1146 Punica granatum HOM05D006267 ORTHO05D007490 2.9e-94 350.5 711 38.7
Sed0002932 Sechium edule HOM05D006267 ORTHO05D007490 2.5e-93 347.4 525 44.0
AUR62019762 Chenopodium quinoa HOM05D006267 ORTHO05D007490 6.1e-92 342.8 663 37.3
Phvul.002G160500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 3.3e-90 337.0 629 39.7
Hund11430 Selenicereus undatus HOM05D006267 ORTHO05D007490 7.4e-90 335.9 533 40.9
VMungo1215G1298 Vigna mungo HOM05D006267 ORTHO05D007490 2.6e-87 327.4 629 38.6
TWI60G1512 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 5.0e-86 323.2 445 45.8
THA.LOC104817764 Tarenaya hassleriana HOM05D006267 ORTHO05D007490 2.5e-85 320.9 660 37.3
vmacro13979 Vaccinium macrocarpon HOM05D006267 ORTHO05D007490 7.2e-85 319.3 622 36.8
Rhsim07G0086900 Rhododendron simsii HOM05D006267 ORTHO05D007490 2.3e-83 314.3 573 39.4
TWI15G0222 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 9.7e-82 308.9 447 44.5
TWI81G0535 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 2.2e-81 307.8 441 44.2
DCAR_005575 Daucus carota HOM05D006267 ORTHO05D007490 2.0e-79 301.2 609 35.6
CARHR046900 Cardamine hirsuta HOM05D006267 ORTHO05D007490 2.9e-78 297.4 693 35.8
AL2G11010 Arabidopsis lyrata HOM05D006267 ORTHO05D007490 1.9e-77 294.7 599 37.1
Thhalv10023327m.g Eutrema salsugineum HOM05D006267 ORTHO05D007490 3.0e-75 287.3 595 37.3
AT1G64050 Arabidopsis thaliana HOM05D006267 ORTHO05D007490 4.4e-74 283.5 602 37.0
Sp2g00660 Schrenkiella parvula HOM05D006267 ORTHO05D007490 1.3e-73 282.0 553 38.5
Aqoxy7G00177 Aquilegia oxysepala HOM05D006267 ORTHO05D007490 2.2e-73 281.2 620 37.6
Carub.0002s0075 Capsella rubella HOM05D006267 ORTHO05D007490 1.1e-72 278.9 599 35.9
ECA246G3109 Erigeron canadensis HOM05D006267 ORTHO05D007490 1.1e-72 278.9 591 37.2
HanXRQChr17g0533871 Helianthus annuus HOM05D006267 ORTHO05D007490 1.7e-70 271.6 601 37.3
Nitab4.5_0002381g0070 Nicotiana tabacum HOM05D006267 ORTHO05D007490 7.2e-69 266.2 642 35.5
MSTRG.13864 Avicennia marina HOM05D006267 ORTHO05D007490 1.2e-66 258.8 534 37.1
MSTRG.1836 Avicennia marina HOM05D006267 ORTHO05D007490 5.7e-66 256.5 533 35.6
C09p18210 Brassica napus HOM05D006267 ORTHO05D007490 5.7e-66 256.5 592 34.8
Nitab4.5_0003366g0020 Nicotiana tabacum HOM05D006267 ORTHO05D007490 9.8e-66 255.8 654 35.2
A09p15090 Brassica napus HOM05D006267 ORTHO05D007490 1.7e-65 255.0 478 38.5
BcaB07g31428 Brassica carinata HOM05D006267 ORTHO05D007490 2.2e-65 254.6 589 35.3
BolC9t54717H Brassica oleracea HOM05D006267 ORTHO05D007490 2.2e-65 254.6 592 35.0
BraA09t37153Z Brassica rapa HOM05D006267 ORTHO05D007490 2.8e-65 254.2 479 38.4
Peaxi162Scf00117g01519 Petunia axillaris HOM05D006267 ORTHO05D007490 6.3e-65 253.1 614 33.7
BcaC04g22526 Brassica carinata HOM05D006267 ORTHO05D007490 1.1e-64 252.3 592 34.8
Migut.E01211 Erythranthe guttata HOM05D006267 ORTHO05D007490 3.1e-64 250.8 572 36.5
Aa31LG2G1120 Aethionema arabicum HOM05D006267 ORTHO05D007490 1.7e-62 245.0 551 37.0
Lsat_1_v5_gn_3_11600 Lactuca sativa HOM05D006267 ORTHO05D007490 5.0e-62 243.4 716 34.8
SGA_v2.0_scaffold111G31467 Striga asiatica HOM05D006267 ORTHO05D007490 1.8e-59 235.0 518 34.6
Sopen12g028680 Solanum pennellii HOM05D006267 ORTHO05D007490 6.8e-59 233.0 656 34.3
MBI04_g06288_MAGBIO Magnolia biondii HOM05D006267 ORTHO05D007490 2.6e-58 231.1 396 40.7
Solyc12g056170.2 Solanum lycopersicum HOM05D006267 ORTHO05D007490 2.2e-57 228.0 656 33.8
PGSC0003DMG400004984 Solanum tuberosum HOM05D006267 ORTHO05D007490 4.9e-57 226.9 718 32.6
PSO063G3925 Papaver somniferum HOM05D006267 ORTHO05D007490 3.1e-56 224.2 650 32.3
PSO170G4156 Papaver somniferum HOM05D006267 ORTHO05D007490 1.2e-55 222.2 649 31.7
CiPaw.11G129100 Carya illinoinensis HOM05D006267 ORTHO05D007490 9.8e-50 202.6 230 50.0
Zm00001eb237760 Zea mays HOM05D006267 ORTHO05D007490 1.3e-46 192.2 589 30.6
SHI07081 Sapria himalayana HOM05D006267 ORTHO05D007490 5.2e-43 180.3 480 31.9
ATR0188G022 Amborella trichopoda HOM05D006267 ORTHO05D007490 9.2e-32 142.9 354 34.2
HPP92_003940 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.1e-29 136.0 642 27.6
HanXRQChr06g0166231 Helianthus annuus HOM05D006267 ORTHO05D007490 8.4e-25 119.8 179 41.3
unitig_52.g17233 Utricularia gibba HOM05D006267 ORTHO05D007490 2.1e-23 115.2 457 27.1
Zm00001eb203960 Zea mays HOM05D006267 ORTHO05D007490 9.0e-19 99.8 314 28.3
CiPaw.11G129200 Carya illinoinensis HOM05D006267 ORTHO05D007490 3.3e-13 81.3 77 51.9
HPP92_023938 Vanilla planifolia HOM05D006267 ORTHO05D007490 2.9e-09 68.2 231 28.6
HPP92_023960 Vanilla planifolia HOM05D006267 ORTHO05D007490 2.9e-09 68.2 116 36.2
MSTRG.11952 Avicennia marina HOM05D006267 ORTHO05D007490 1.0e-06 59.7 172 26.2
CDE03G0464 Ceratophyllum demersum HOM05D000575 ORTHO05D004448 6.7e-06 57.0 435 24.4


User provided reference genes

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