Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 4.7e-188 661.0 325 100.0
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 3.4e-162 575.1 315 90.8
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 9.7e-125 450.7 315 72.1
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 2.4e-115 419.5 315 69.8
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 2.0e-114 416.4 315 69.2
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.8e-110 401.0 316 65.5
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.0e-109 399.8 316 65.5
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-106 390.6 316 64.9
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.7e-106 389.4 316 64.2
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.7e-106 389.4 316 64.2
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 5.4e-75 285.4 325 50.5
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 7.1e-75 285.0 325 49.5
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 4.7e-71 272.3 306 49.0
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 2.4e-67 260.0 320 50.0
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 5.4e-67 258.8 325 46.2
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 9.3e-67 258.1 306 48.7
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 4.6e-66 255.8 304 48.7
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.7e-65 253.8 325 45.2
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 3.0e-65 253.1 290 49.3
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 3.0e-65 253.1 290 49.3
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 8.7e-65 251.5 324 46.0
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 2.8e-63 246.5 317 44.5
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 6.2e-63 245.4 317 45.1
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.8e-62 243.8 301 43.9
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 2.0e-61 240.4 324 44.4
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 3.4e-61 239.6 323 42.1
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 4.5e-61 239.2 294 46.9
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 1.1e-59 234.6 324 43.8
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.1e-59 234.6 331 43.8
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 2.4e-59 233.4 331 43.8
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 3.2e-59 233.0 315 45.4
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 4.6e-58 229.2 315 45.1
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 6.0e-58 228.8 315 45.1
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 6.2e-55 218.8 277 46.9
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.4e-54 217.6 286 42.3
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 9.9e-53 211.5 321 40.2
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 2.9e-52 209.9 325 40.0
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 3.2e-51 206.5 322 39.1
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 1.8e-49 200.7 300 38.3
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 2.3e-49 200.3 325 39.4
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 3.3e-48 196.4 324 39.2
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 3.3e-48 196.4 324 39.2
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 4.3e-48 196.1 323 38.7
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 5.6e-48 195.7 324 38.0
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 5.6e-48 195.7 291 41.9
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.3e-47 194.5 327 39.1
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 2.1e-47 193.7 333 40.2
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 2.8e-47 193.4 307 39.4
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 3.7e-47 193.0 330 39.4
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 9.0e-46 188.3 319 40.1
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 1.5e-45 187.6 292 40.4
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 2.9e-44 183.3 324 38.9
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 2.9e-44 183.3 328 39.9
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 4.9e-44 182.6 298 37.9
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 3.2e-43 179.9 329 39.2
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 9.3e-43 178.3 328 39.0
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 2.1e-42 177.2 307 37.8
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 2.1e-42 177.2 314 39.2
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.5e-42 176.4 291 37.5
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 1.3e-41 174.5 288 38.9
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 2.3e-41 173.7 282 39.4
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 3.0e-41 173.3 297 37.4
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 5.1e-41 172.6 293 37.5
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 3.3e-40 169.9 286 37.4
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 7.4e-40 168.7 311 37.9
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.3e-39 167.9 316 36.7
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 3.7e-39 166.4 292 37.0
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 1.8e-38 164.1 297 37.0
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 2.4e-38 163.7 300 35.7
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 9.0e-38 161.8 300 34.3
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.2e-37 161.4 292 36.6
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 1.5e-37 161.0 298 35.6
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 4.5e-37 159.5 300 34.3
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 2.9e-36 156.8 271 36.9
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 2.9e-36 156.8 290 34.5
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 6.5e-36 155.6 282 34.4
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.6e-34 151.0 204 44.1
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 2.1e-34 150.6 316 33.5
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 2.1e-34 150.6 316 33.5
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 3.6e-34 149.8 316 33.5
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 1.0e-33 148.3 284 34.5
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.3e-33 147.9 288 34.4
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 2.3e-33 147.1 284 34.5
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 2.3e-33 147.1 284 34.5
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 2.8e-31 140.2 287 33.8
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 3.7e-31 139.8 257 33.5
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 2.6e-29 133.7 165 43.0
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.9e-28 130.2 297 33.7
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 2.9e-28 130.2 278 35.3
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.5e-27 127.1 260 35.4
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 4.2e-27 126.3 203 38.4
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 4.2e-27 126.3 160 45.6
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 3.6e-26 123.2 243 35.8
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 3.6e-26 123.2 243 35.8
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 7.4e-24 115.5 127 42.5
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.2e-23 114.0 204 38.7
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 8.2e-23 112.1 265 32.1
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 4.1e-22 109.8 237 30.8
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.9e-19 100.9 238 31.5
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 3.6e-18 96.7 248 31.5
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 1.5e-11 74.7 122 36.9
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 3.6e-10 70.1 90 43.3
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 8.2e-07 58.9 88 37.5


User provided reference genes

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