Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1083500 Malus domestica HOM05D001888 ORTHO05D001842 1.2e-78 296.6 167 100.0
MD14G1099400 Malus domestica HOM05D001888 ORTHO05D001842 3.0e-29 132.5 94 80.9
FAN04G2882 Fragaria x ananassa HOM05D001888 ORTHO05D001842 6.7e-29 131.3 129 59.7
FAN08G2193 Fragaria x ananassa HOM05D001888 ORTHO05D001842 6.7e-29 131.3 125 60.8
FvH4_5g02001 Fragaria vesca HOM05D001888 ORTHO05D001842 4.4e-28 128.6 125 60.0
FAN18G1824 Fragaria x ananassa HOM05D001888 ORTHO05D001842 4.4e-28 128.6 125 60.0
RcHm_v2.0_Chr7g0198351 Rosa chinensis HOM05D001888 ORTHO05D001842 8.2e-27 124.4 117 60.7
FAN13G0626 Fragaria x ananassa HOM05D001888 ORTHO05D001842 5.3e-26 121.7 121 57.9
CiPaw.12G095000 Carya illinoinensis HOM05D001888 ORTHO05D001842 6.9e-26 121.3 141 53.2
Prupe.5G096300 Prunus persica HOM05D001888 ORTHO05D001842 2.2e-24 116.3 105 65.7
Dinv37661 Davidia involucrata HOM05D001888 ORTHO05D001842 2.1e-22 109.8 122 52.5
Potri.001G106700 Populus trichocarpa HOM05D001888 ORTHO05D001842 8.0e-22 107.8 124 51.6
Eucgr.D01870 Eucalyptus grandis HOM05D001888 ORTHO05D001842 1.0e-21 107.5 121 51.2
Duzib068G0855 Durio zibethinus HOM05D001888 ORTHO05D001842 3.0e-21 105.9 124 50.0
MD06G1078600 Malus domestica HOM05D001888 ORTHO05D001842 3.0e-21 105.9 70 87.1
Thecc.03G275900 Theobroma cacao HOM05D001888 ORTHO05D001842 3.9e-21 105.5 126 46.8
CiPaw.11G138000 Carya illinoinensis HOM05D001888 ORTHO05D001842 6.7e-21 104.8 139 47.5
Sabra03G0088100 Salix brachista HOM05D001888 ORTHO05D001842 1.5e-20 103.6 124 50.8
Potri.003G124600 Populus trichocarpa HOM05D001888 ORTHO05D001842 4.4e-20 102.1 124 50.0
Manes.02G023900 Manihot esculenta HOM05D001888 ORTHO05D001842 2.8e-19 99.4 118 46.6
TAR374G1672 Trochodendron aralioides HOM05D001888 ORTHO05D001842 3.7e-19 99.0 119 48.7
TAR367G0006 Trochodendron aralioides HOM05D001888 ORTHO05D001842 1.1e-18 97.4 119 50.4
TAR375G1033 Trochodendron aralioides HOM05D001888 ORTHO05D001842 1.1e-18 97.4 119 50.4
Gohir.D08G199200 Gossypium hirsutum HOM05D001888 ORTHO05D001842 3.1e-18 95.9 124 45.2
Gorai.004G210000 Gossypium raimondii HOM05D001888 ORTHO05D001842 3.1e-18 95.9 124 45.2
Gohir.A08G180400 Gossypium hirsutum HOM05D001888 ORTHO05D001842 4.1e-18 95.5 124 45.2
TWI60G0760 Tripterygium wilfordii HOM05D001888 ORTHO05D001842 4.1e-18 95.5 124 47.6
Phvul.002G287700 Phaseolus vulgaris HOM05D001888 ORTHO05D001842 5.3e-18 95.1 116 52.6
Manes.01G063600 Manihot esculenta HOM05D001888 ORTHO05D001842 1.6e-17 93.6 124 43.5
Glyma.01G218100 Glycine max HOM05D001888 ORTHO05D001842 2.6e-17 92.8 123 47.2
TAR636G2336 Trochodendron aralioides HOM05D001888 ORTHO05D001842 4.5e-17 92.0 120 46.7
Haze_08882 Corylus avellana HOM05D001888 ORTHO05D001842 5.9e-17 91.7 109 51.4
Hma1.2p1_1943F.1_g308520 Hydrangea macrophylla HOM05D001888 ORTHO05D001842 5.9e-17 91.7 117 48.7
TPR.G12909 Trifolium pratense HOM05D001888 ORTHO05D001842 5.9e-17 91.7 130 47.7
Aqoxy7G00360 Aquilegia oxysepala HOM05D001888 ORTHO05D001842 1.0e-16 90.9 129 43.4
vmacro13947 Vaccinium macrocarpon HOM05D001888 ORTHO05D001842 1.0e-16 90.9 126 43.7
CSS0014564 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 2.9e-16 89.4 122 44.3
CSS0016128 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 2.9e-16 89.4 122 44.3
Actinidia05215 Actinidia chinensis HOM05D001888 ORTHO05D001842 5.0e-16 88.6 118 44.1
Medtr0415s0020 Medicago truncatula HOM05D001888 ORTHO05D001842 5.0e-16 88.6 124 45.2
Lalb_Chr16g0389871 Lupinus albus HOM05D001888 ORTHO05D001842 6.5e-16 88.2 121 45.5
Glyma.11G025100 Glycine max HOM05D001888 ORTHO05D001842 4.2e-15 85.5 129 45.0
Medtr5g010520 Medicago truncatula HOM05D001888 ORTHO05D001842 1.2e-14 84.0 141 40.4
Sed0026333 Sechium edule HOM05D001888 ORTHO05D001842 1.2e-14 84.0 123 42.3
Nitab4.5_0001356g0050 Nicotiana tabacum HOM05D001888 ORTHO05D001842 2.7e-14 82.8 121 38.8
Gohir.A12G226900 Gossypium hirsutum HOM05D001888 ORTHO05D001842 4.7e-14 82.0 105 45.7
Gohir.D12G229250 Gossypium hirsutum HOM05D001888 ORTHO05D001842 8.0e-14 81.3 102 46.1
Gorai.008G245500 Gossypium raimondii HOM05D001888 ORTHO05D001842 8.0e-14 81.3 102 46.1
CAN.G859.17 Capsicum annuum HOM05D001888 ORTHO05D001842 1.0e-13 80.9 122 39.3
Glyma.08G013000 Glycine max HOM05D001888 ORTHO05D001842 5.2e-13 78.6 94 52.1
Psat7g035000 Pisum sativum HOM05D001888 ORTHO05D001842 6.7e-13 78.2 113 46.9
Phvul.002G155900 Phaseolus vulgaris HOM05D001888 ORTHO05D001842 8.8e-13 77.8 101 48.5
CANSAT21G1127 Cannabis sativa HOM05D001888 ORTHO05D001842 2.0e-12 76.6 101 47.5
Cc08_g14420 Coffea canephora HOM05D001888 ORTHO05D001842 2.6e-12 76.3 123 39.0
CsaV3_4G006030 Cucumis sativus L. HOM05D001888 ORTHO05D001842 2.6e-12 76.3 115 42.6
TPR.G6640 Trifolium pratense HOM05D001888 ORTHO05D001842 1.3e-11 73.9 104 47.1
VMungo1215G2968 Vigna mungo HOM05D001888 ORTHO05D001842 3.7e-11 72.4 101 45.5
Eucgr.E00571 Eucalyptus grandis HOM05D001888 ORTHO05D001842 8.2e-11 71.2 87 48.3
RcHm_v2.0_Chr1g0377241 Rosa chinensis HOM05D001888 ORTHO05D001842 1.1e-10 70.9 120 38.3
THA.LOC104818070 Tarenaya hassleriana HOM05D001888 ORTHO05D001842 1.1e-10 70.9 110 40.0
Nitab4.5_0001200g0170 Nicotiana tabacum HOM05D001888 ORTHO05D001842 1.8e-10 70.1 121 36.4
vmacro11308 Vaccinium macrocarpon HOM05D001888 ORTHO05D001842 1.8e-10 70.1 126 38.1
Glyma.05G206100 Glycine max HOM05D001888 ORTHO05D001842 2.4e-10 69.7 93 47.3
arahy.Tifrunner.gnm1.ann1.SEEZ4U Arachis hypogaea HOM05D001888 ORTHO05D001842 3.1e-10 69.3 105 48.6
Gorai.003G160000 Gossypium raimondii HOM05D001888 ORTHO05D001842 3.1e-10 69.3 122 38.5
Sed0020347 Sechium edule HOM05D001888 ORTHO05D001842 3.1e-10 69.3 129 39.5
Gorai.008G277700 Gossypium raimondii HOM05D001888 ORTHO05D001842 5.3e-10 68.6 115 36.5
Peaxi162Scf00102g01531 Petunia axillaris HOM05D001888 ORTHO05D001842 7.0e-10 68.2 129 34.9
Rhsim02G0225900 Rhododendron simsii HOM05D001888 ORTHO05D001842 9.1e-10 67.8 105 40.0
arahy.Tifrunner.gnm1.ann1.2U7QKV Arachis hypogaea HOM05D001888 ORTHO05D001842 1.2e-09 67.4 103 48.5
ClCG01G002910 Citrullus lanatus HOM05D001888 ORTHO05D001842 1.2e-09 67.4 121 38.0
Solyc08g007970.3 Solanum lycopersicum HOM05D001888 ORTHO05D001842 1.2e-09 67.4 129 33.3
Rhsim07G0091800 Rhododendron simsii HOM05D001888 ORTHO05D001842 1.6e-09 67.0 92 43.5
Thhalv10023231m.g Eutrema salsugineum HOM05D001888 ORTHO05D001842 2.0e-09 66.6 119 37.8
AT1G63300 Arabidopsis thaliana HOM05D001888 ORTHO05D001842 2.7e-09 66.2 120 35.8
MSTRG.25591 Avicennia marina HOM05D001888 ORTHO05D001842 2.7e-09 66.2 122 36.1
Gohir.A12G257900 Gossypium hirsutum HOM05D001888 ORTHO05D001842 2.7e-09 66.2 116 36.2
TWI81G0663 Tripterygium wilfordii HOM05D001888 ORTHO05D001842 2.7e-09 66.2 78 50.0
DCAR_004646 Daucus carota HOM05D000683 ORTHO05D001842 3.5e-09 65.9 122 40.2
Sopen08g003850 Solanum pennellii HOM05D001888 ORTHO05D001842 4.5e-09 65.5 129 32.6
Dinv38962 Davidia involucrata HOM05D001888 ORTHO05D001842 5.9e-09 65.1 77 49.4
PGSC0003DMG400005777 Solanum tuberosum HOM05D001888 ORTHO05D001842 5.9e-09 65.1 121 33.9
MELO3C016346.2 Cucumis melo HOM05D001888 ORTHO05D001842 7.7e-09 64.7 118 39.0
CsaV3_5G002990 Cucumis sativus L. HOM05D001888 ORTHO05D001842 1.3e-08 63.9 121 38.0
Actinidia27391 Actinidia chinensis HOM05D001888 ORTHO05D001842 1.7e-08 63.5 75 45.3
MELO3C005655.2 Cucumis melo HOM05D001888 ORTHO05D001842 1.7e-08 63.5 121 37.2
Gohir.A03G015600 Gossypium hirsutum HOM05D001888 ORTHO05D001842 1.7e-08 63.5 124 36.3
Aa31LG9G700 Aethionema arabicum HOM05D001888 ORTHO05D001842 2.2e-08 63.2 121 36.4
Peaxi162Scf00714g00016 Petunia axillaris HOM05D001888 ORTHO05D001842 2.2e-08 63.2 101 39.6
Hund14761 Selenicereus undatus HOM05D001888 ORTHO05D001842 2.9e-08 62.8 117 36.8
MSTRG.11997 Avicennia marina HOM05D001888 ORTHO05D001842 3.8e-08 62.4 122 34.4
EL10Ac5g12777 Beta vulgaris HOM05D001888 ORTHO05D001842 3.8e-08 62.4 117 39.3
Gohir.D12G259300 Gossypium hirsutum HOM05D001888 ORTHO05D001842 3.8e-08 62.4 113 34.5
CAN.G792.86 Capsicum annuum HOM05D001888 ORTHO05D001842 6.5e-08 61.6 129 31.0
AL2G11850 Arabidopsis lyrata HOM05D001888 ORTHO05D001842 8.5e-08 61.2 120 36.7
Nitab4.5_0005621g0030 Nicotiana tabacum HOM05D001888 ORTHO05D001842 1.1e-07 60.8 81 40.7
Aa31LG2G720 Aethionema arabicum HOM05D001888 ORTHO05D001842 1.5e-07 60.5 90 42.2
PGR042G3805 Punica granatum HOM05D001888 ORTHO05D001842 3.2e-07 59.3 118 36.4
Lj2A188T36 Lonicera japonica HOM05D001888 ORTHO05D001842 4.2e-07 58.9 118 33.1
PGSC0003DMG400012221 Solanum tuberosum HOM05D001888 ORTHO05D001842 4.2e-07 58.9 99 36.4
ClCG07G008010 Citrullus lanatus HOM05D001888 ORTHO05D001842 5.5e-07 58.5 90 40.0
Ciclev10018577m.g Citrus clementina HOM05D001888 ORTHO05D001842 5.5e-07 58.5 78 46.2
MBI17_g39342_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 5.5e-07 58.5 126 39.7
Sopen08g029100 Solanum pennellii HOM05D001888 ORTHO05D001842 5.5e-07 58.5 99 35.4
CiPaw.04G070900 Carya illinoinensis HOM05D001888 ORTHO05D001842 7.2e-07 58.2 114 38.6
MSTRG.13835 Avicennia marina HOM05D001888 ORTHO05D001842 9.4e-07 57.8 110 36.4
FAN06G3307 Fragaria x ananassa HOM05D001888 ORTHO05D001842 1.2e-06 57.4 120 33.3
FAN06G3714 Fragaria x ananassa HOM05D001888 ORTHO05D001842 1.2e-06 57.4 120 33.3
Solyc08g080780.4 Solanum lycopersicum HOM05D001888 ORTHO05D001842 2.1e-06 56.6 90 36.7
MSTRG.1880 Avicennia marina HOM05D001888 ORTHO05D001842 2.7e-06 56.2 109 38.5
Nitab4.5_0009051g0010 Nicotiana tabacum HOM05D001888 ORTHO05D001842 2.7e-06 56.2 92 38.0
Nitab4.5_0004032g0050 Nicotiana tabacum HOM05D001888 ORTHO05D001842 3.6e-06 55.8 89 36.0
AUR62010611 Chenopodium quinoa HOM05D001888 ORTHO05D001842 4.7e-06 55.5 113 37.2
arahy.Tifrunner.gnm1.ann1.BHNX0U Arachis hypogaea HOM05D001888 ORTHO05D001842 8.0e-06 54.7 87 44.8
arahy.Tifrunner.gnm1.ann1.TJC463 Arachis hypogaea HOM05D001888 ORTHO05D001842 8.0e-06 54.7 86 45.3
Sp7g00760 Schrenkiella parvula HOM05D001888 ORTHO05D001842 8.0e-06 54.7 111 37.8
SpUn0010_0240 Schrenkiella parvula HOM05D001888 ORTHO05D001842 8.0e-06 54.7 111 37.8


User provided reference genes

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