Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 2.2e-197 692.6 492 100.0
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.2e-145 520.8 493 78.9
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 2.4e-127 459.9 513 75.2
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.6e-107 394.0 509 70.9
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 5.8e-105 385.6 504 65.7
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.9e-105 384.8 504 67.5
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.2e-104 383.6 509 58.0
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.9e-104 382.5 504 65.5
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 6.4e-104 382.1 493 49.3
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.4e-104 382.1 504 63.7
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.9e-103 380.6 504 65.5
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 7.9e-102 375.2 498 66.3
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.8e-101 374.0 525 59.0
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 4.8e-99 365.9 504 46.4
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 6.2e-99 365.5 497 67.2
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.4e-98 364.4 499 46.9
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 4.0e-98 362.8 500 46.6
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 5.3e-98 362.5 497 60.2
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.2e-97 361.3 500 48.6
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 2.6e-97 360.1 507 45.2
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 4.5e-97 359.4 498 48.6
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 6.5e-96 355.5 500 44.4
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 8.4e-96 355.1 502 60.8
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 8.4e-96 355.1 493 63.5
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 8.4e-96 355.1 501 45.9
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.9e-95 354.0 476 60.9
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 1.6e-94 350.9 501 44.3
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.1e-92 344.7 494 61.9
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.9e-92 344.0 519 64.9
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.5e-92 343.6 504 59.1
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.5e-92 343.6 495 44.4
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.3e-92 343.2 494 58.5
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 4.3e-92 342.8 494 58.5
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 7.4e-92 342.0 499 44.9
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 1.6e-91 340.9 488 45.5
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.1e-91 340.5 501 44.3
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 4.8e-91 339.3 490 48.2
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 4.8e-91 339.3 483 57.1
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 6.2e-91 339.0 473 45.0
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.1e-90 338.2 496 44.2
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 1.8e-90 337.4 503 57.7
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 3.1e-90 336.7 538 41.8
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 3.1e-90 336.7 474 45.8
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 4.0e-90 336.3 501 56.1
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 9.0e-90 335.1 501 43.3
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 2.6e-89 333.6 491 49.9
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 2.9e-88 330.1 502 43.4
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 2.9e-88 330.1 504 53.0
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.5e-87 327.0 480 44.4
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 9.3e-87 325.1 499 45.1
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.7e-86 323.6 499 60.5
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 3.5e-86 323.2 502 45.8
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.3e-85 321.2 476 43.9
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 1.8e-85 320.9 482 43.4
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 5.1e-85 319.3 472 58.7
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 5.1e-85 319.3 500 43.2
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 8.7e-85 318.5 511 49.9
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.1e-84 318.2 467 52.5
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 1.5e-84 317.8 509 51.5
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.9e-84 317.4 501 42.5
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 3.7e-83 313.2 471 45.9
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 4.8e-83 312.8 491 43.0
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.8e-82 310.8 493 49.1
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.8e-82 310.8 493 62.1
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 6.9e-82 308.9 499 41.1
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 9.0e-82 308.5 511 60.7
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.2e-81 308.1 466 50.9
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 5.9e-81 305.8 498 41.2
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 1.0e-80 305.1 498 43.8
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.2e-80 303.9 502 51.8
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 3.8e-80 303.1 470 43.4
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 2.1e-78 297.4 452 42.5
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.3e-77 293.9 502 39.2
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 2.0e-76 290.8 494 46.0
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 5.7e-76 289.3 506 41.1
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.8e-75 287.0 494 47.2
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 8.2e-75 285.4 455 41.5
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.1e-74 285.0 542 48.2
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 5.3e-74 282.7 522 47.1
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 5.3e-74 282.7 495 44.4
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 5.3e-74 282.7 495 44.4
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 2.0e-73 280.8 497 48.3
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 5.9e-73 279.3 493 48.1
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 7.7e-73 278.9 438 41.6
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 2.9e-72 276.9 492 46.7
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 5.0e-72 276.2 518 44.8
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 3.2e-71 273.5 492 53.5
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 7.2e-71 272.3 494 39.3
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 9.4e-71 271.9 453 45.0
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 2.1e-70 270.8 518 45.9
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 3.6e-70 270.0 498 51.8
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 4.7e-70 269.6 499 50.1
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.0e-69 268.5 505 38.6
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 6.7e-69 265.8 496 46.0
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 3.3e-68 263.5 511 37.6
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 4.8e-67 259.6 431 40.8
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 5.3e-66 256.1 472 39.4
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.0e-65 254.2 499 47.9
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 3.5e-65 253.4 494 42.9
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 5.9e-65 252.7 399 66.7
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 7.7e-65 252.3 493 48.9
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 2.9e-64 250.4 493 40.8
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.2e-62 245.0 494 50.4
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 2.1e-62 244.2 503 37.8
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 1.8e-61 241.1 574 49.1
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 9.7e-60 235.3 536 45.3
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 9.7e-60 235.3 536 45.3
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 2.2e-59 234.2 490 34.9
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 8.2e-59 232.3 581 49.7
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.8e-58 231.1 519 45.7
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.2e-57 228.4 505 41.8
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.0e-56 225.3 480 36.9
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 5.0e-56 223.0 429 42.7
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 1.9e-55 221.1 453 34.0
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.9e-55 221.1 138 78.3
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 2.7e-54 217.2 465 36.6
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.3e-48 198.4 149 69.8
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 7.2e-47 192.6 433 39.5
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 8.8e-45 185.7 190 58.4
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 2.0e-44 184.5 446 39.9
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 7.5e-44 182.6 508 34.3
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 2.8e-43 180.6 191 56.5
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.8e-43 180.6 127 71.7
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 3.4e-36 157.1 109 72.5
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.2e-34 150.6 518 35.9
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 3.2e-34 150.6 463 32.0
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 9.2e-26 122.5 74 78.4
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 4.6e-25 120.2 139 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 1.9e-23 114.8 411 27.3
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.0e-20 104.8 76 64.5
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 6.0e-17 93.2 100 50.0
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 8.9e-13 79.3 80 48.8
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 2.0e-12 78.2 61 50.8
PRCOL_00001099 Prasinoderma coloniale HOM05D005805 ORTHO05D007226 3.3e-07 60.8 139 31.7


User provided reference genes

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