Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1060900 Malus domestica HOM05D001126 ORTHO05D000991 4.7e-61 237.7 119 100.0
Prupe.5G071700 Prunus persica HOM05D001126 ORTHO05D000991 3.9e-31 138.3 195 45.6
MD06G1060700 Malus domestica HOM05D001126 ORTHO05D000991 1.5e-30 136.3 195 45.6
Prupe.5G071900 Prunus persica HOM05D001126 ORTHO05D000991 1.4e-28 129.8 195 44.6
RcHm_v2.0_Chr7g0202951 Rosa chinensis HOM05D001126 ORTHO05D000991 3.8e-26 121.7 195 42.6
RcHm_v2.0_Chr7g0202961 Rosa chinensis HOM05D001126 ORTHO05D000991 8.4e-26 120.6 195 42.1
FvH4_3g26880 Fragaria vesca HOM05D001126 ORTHO05D000991 4.2e-25 118.2 195 41.5
FAN11G0525 Fragaria x ananassa HOM05D001126 ORTHO05D000991 4.2e-25 118.2 195 41.5
FAN25G1129 Fragaria x ananassa HOM05D001126 ORTHO05D000991 4.2e-25 118.2 195 41.5
Prupe.5G071600 Prunus persica HOM05D001126 ORTHO05D000991 1.6e-24 116.3 195 41.0
MD06G1060600 Malus domestica HOM05D001126 ORTHO05D000991 2.7e-24 115.5 195 41.0
Manes.01G079500 Manihot esculenta HOM05D001126 ORTHO05D000991 1.5e-22 109.8 195 40.5
MSTRG.12088 Avicennia marina HOM05D001126 ORTHO05D000991 2.5e-22 109.0 195 37.4
arahy.Tifrunner.gnm1.ann1.KWV6UN Arachis hypogaea HOM05D001126 ORTHO05D000991 2.8e-21 105.5 201 36.3
arahy.Tifrunner.gnm1.ann1.V75HI3 Arachis hypogaea HOM05D001126 ORTHO05D000991 2.8e-21 105.5 201 36.3
CiPaw.12G108900 Carya illinoinensis HOM05D001126 ORTHO05D000991 3.7e-21 105.1 195 37.9
DCAR_027782 Daucus carota HOM05D001126 ORTHO05D000991 8.2e-21 104.0 194 38.7
FAN16G0079 Fragaria x ananassa HOM05D001126 ORTHO05D000991 8.2e-21 104.0 193 38.3
FAN25G0791 Fragaria x ananassa HOM05D001126 ORTHO05D000991 8.2e-21 104.0 193 38.3
Actinidia05201 Actinidia chinensis HOM05D001126 ORTHO05D000991 1.4e-20 103.2 195 37.9
Actinidia27462 Actinidia chinensis HOM05D001126 ORTHO05D000991 1.8e-20 102.8 195 38.5
Nitab4.5_0000312g0150 Nicotiana tabacum HOM05D001126 ORTHO05D000991 1.8e-20 102.8 162 42.0
Ciclev10018984m.g Citrus clementina HOM05D001126 ORTHO05D000991 2.4e-20 102.4 195 37.4
RcHm_v2.0_Chr7g0202971 Rosa chinensis HOM05D001126 ORTHO05D000991 4.1e-20 101.7 193 38.9
QL12p012568 Quercus lobata HOM05D001126 ORTHO05D000991 5.3e-20 101.3 195 37.4
Dinv21622 Davidia involucrata HOM05D001126 ORTHO05D000991 6.9e-20 100.9 166 44.0
CANSAT21G0832 Cannabis sativa HOM05D001126 ORTHO05D000991 1.2e-19 100.1 195 37.4
CSS0001392 Camellia sinensis var. sinensis HOM05D001126 ORTHO05D000991 1.5e-19 99.8 196 37.8
arahy.Tifrunner.gnm1.ann1.EGMR3D Arachis hypogaea HOM05D001126 ORTHO05D000991 3.4e-19 98.6 198 34.8
arahy.Tifrunner.gnm1.ann1.L34K9S Arachis hypogaea HOM05D001126 ORTHO05D000991 3.4e-19 98.6 198 34.8
Cfa007765 Carpinus fangiana HOM05D001126 ORTHO05D000991 3.4e-19 98.6 195 35.9
Lj2C216T2 Lonicera japonica HOM05D001126 ORTHO05D000991 3.4e-19 98.6 195 33.8
CiPaw.11G152900 Carya illinoinensis HOM05D001126 ORTHO05D000991 4.5e-19 98.2 194 35.6
Atru.chr9.1328 Acer truncatum HOM05D001126 ORTHO05D000991 5.9e-19 97.8 196 36.7
Haze_14308 Corylus avellana HOM05D001126 ORTHO05D000991 5.9e-19 97.8 195 36.4
FAN23G1624 Fragaria x ananassa HOM05D001126 ORTHO05D000991 5.9e-19 97.8 193 37.8
Lj4g0001641 Lotus japonicus HOM05D001126 ORTHO05D000991 1.0e-18 97.1 199 34.2
GSVIVG01001310001 Vitis vinifera HOM05D001126 ORTHO05D000991 1.0e-18 97.1 195 35.4
Haze_21287 Corylus avellana HOM05D001126 ORTHO05D000991 1.7e-18 96.3 188 36.2
Gorai.008G236000 Gossypium raimondii HOM05D001126 ORTHO05D000991 1.7e-18 96.3 197 36.5
Lj8C260T5 Lonicera japonica HOM05D001126 ORTHO05D000991 1.7e-18 96.3 195 34.9
Eucgr.D02066 Eucalyptus grandis HOM05D001126 ORTHO05D000991 2.2e-18 95.9 195 35.9
FAN28G0762 Fragaria x ananassa HOM05D001126 ORTHO05D000991 2.9e-18 95.5 193 36.8
Lj8P260T34 Lonicera japonica HOM05D001126 ORTHO05D000991 2.9e-18 95.5 195 36.4
Lalb_Chr05g0225761 Lupinus albus HOM05D001126 ORTHO05D000991 2.9e-18 95.5 196 36.2
TAR629G0685 Trochodendron aralioides HOM05D001126 ORTHO05D000991 2.9e-18 95.5 195 35.9
Duzib205G0781 Durio zibethinus HOM05D001126 ORTHO05D000991 3.8e-18 95.1 197 38.1
FvH4_1g17520 Fragaria vesca HOM05D001126 ORTHO05D000991 3.8e-18 95.1 193 36.8
FAN19G0018 Fragaria x ananassa HOM05D001126 ORTHO05D000991 3.8e-18 95.1 193 36.8
FAN26G3347 Fragaria x ananassa HOM05D001126 ORTHO05D000991 5.0e-18 94.7 193 36.8
Rhsim07G0107800 Rhododendron simsii HOM05D001126 ORTHO05D000991 5.0e-18 94.7 195 36.9
Thecc.03G253400 Theobroma cacao HOM05D001126 ORTHO05D000991 8.5e-18 94.0 197 36.0
Glyma.17G140800 Glycine max HOM05D001126 ORTHO05D000991 4.2e-17 91.7 197 33.5
Lj8C260T6 Lonicera japonica HOM05D001126 ORTHO05D000991 4.2e-17 91.7 195 34.9
CiPaw.11G153000 Carya illinoinensis HOM05D001126 ORTHO05D000991 7.2e-17 90.9 195 34.4
Glyma.05G058400 Glycine max HOM05D001126 ORTHO05D000991 7.2e-17 90.9 197 33.5
Rhsim05G0003300 Rhododendron simsii HOM05D001126 ORTHO05D000991 7.2e-17 90.9 195 36.4
Rhsim05G0003400 Rhododendron simsii HOM05D001126 ORTHO05D000991 7.2e-17 90.9 195 36.4
THA.LOC104798374 Tarenaya hassleriana HOM05D001126 ORTHO05D000991 7.2e-17 90.9 195 34.4
Ca_21957_v3 Cicer arietinum L. HOM05D001126 ORTHO05D000991 9.4e-17 90.5 198 32.3
Eucgr.D02056 Eucalyptus grandis HOM05D001126 ORTHO05D000991 2.1e-16 89.4 197 34.5
Migut.A00965 Erythranthe guttata HOM05D001126 ORTHO05D000991 2.7e-16 89.0 199 33.2
SalBow6G4164 Salvia bowleyana HOM05D001126 ORTHO05D000991 2.7e-16 89.0 195 34.9
TPR.G37645 Trifolium pratense HOM05D001126 ORTHO05D000991 2.7e-16 89.0 197 32.5
Oeu062974.1 Olea europaea HOM05D001126 ORTHO05D000991 4.6e-16 88.2 195 34.9
Peaxi162Scf00002g01619 Petunia axillaris HOM05D001126 ORTHO05D000991 4.6e-16 88.2 194 34.5
TPR.G37682 Trifolium pratense HOM05D001126 ORTHO05D000991 4.6e-16 88.2 197 32.5
BcaNung03470 Brassica carinata HOM05D001126 ORTHO05D000991 6.1e-16 87.8 197 35.0
VMungo0251G2404 Vigna mungo HOM05D001126 ORTHO05D000991 6.1e-16 87.8 197 33.5
Lj8C261T1 Lonicera japonica HOM05D001126 ORTHO05D000991 1.0e-15 87.0 195 32.8
TWI81G0441 Tripterygium wilfordii HOM05D001126 ORTHO05D000991 1.0e-15 87.0 207 33.3
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 1.4e-15 86.7 177 36.2
BcaC06g33547 Brassica carinata HOM05D001126 ORTHO05D000991 1.8e-15 86.3 197 34.5
Eucgr.D02054 Eucalyptus grandis HOM05D001126 ORTHO05D000991 1.8e-15 86.3 194 35.1
Nitab4.5_0012281g0020 Nicotiana tabacum HOM05D001126 ORTHO05D000991 1.8e-15 86.3 194 34.0
unitig_22.g6245 Utricularia gibba HOM05D001126 ORTHO05D000991 1.8e-15 86.3 195 34.9
BolC7t45375H Brassica oleracea HOM05D001126 ORTHO05D000991 2.3e-15 85.9 197 34.5
Psat4g070280 Pisum sativum HOM05D001126 ORTHO05D000991 2.3e-15 85.9 196 31.6
C07p48680 Brassica napus HOM05D001126 ORTHO05D000991 3.0e-15 85.5 197 34.5
Eucgr.D02048 Eucalyptus grandis HOM05D001126 ORTHO05D000991 3.0e-15 85.5 194 34.5
Lsat_1_v5_gn_6_3201 Lactuca sativa HOM05D001126 ORTHO05D000991 3.0e-15 85.5 195 33.8
Lj8C261T2 Lonicera japonica HOM05D001126 ORTHO05D000991 3.0e-15 85.5 195 32.3
HanXRQChr03g0081781 Helianthus annuus HOM05D001126 ORTHO05D000991 3.9e-15 85.1 195 34.4
Sabra03G0076800 Salix brachista HOM05D001126 ORTHO05D000991 3.9e-15 85.1 195 33.8
ECA233G4058 Erigeron canadensis HOM05D001126 ORTHO05D000991 5.1e-15 84.7 195 34.9
Sed0007528 Sechium edule HOM05D001126 ORTHO05D000991 5.1e-15 84.7 197 32.5
PGSC0003DMG401004803 Solanum tuberosum HOM05D001126 ORTHO05D000991 5.1e-15 84.7 191 34.0
AL7G37450 Arabidopsis lyrata HOM05D001126 ORTHO05D000991 6.7e-15 84.3 197 35.0
AL8G10390 Arabidopsis lyrata HOM05D001126 ORTHO05D000991 6.7e-15 84.3 195 34.4
AT5G47580 Arabidopsis thaliana HOM05D001126 ORTHO05D000991 6.7e-15 84.3 195 34.4
Eucgr.L02879 Eucalyptus grandis HOM05D001126 ORTHO05D000991 6.7e-15 84.3 194 34.0
Medtr4g101070 Medicago truncatula HOM05D001126 ORTHO05D000991 6.7e-15 84.3 197 31.5
Aa31LG9G5460 Aethionema arabicum HOM05D001126 ORTHO05D000991 8.8e-15 84.0 195 34.9
Sp7g16920 Schrenkiella parvula HOM05D001126 ORTHO05D000991 8.8e-15 84.0 197 36.0
A03p50370 Brassica napus HOM05D001126 ORTHO05D000991 1.1e-14 83.6 197 34.0
Eucgr.D02052 Eucalyptus grandis HOM05D001126 ORTHO05D000991 1.1e-14 83.6 194 34.5
Carub.0007s2415 Capsella rubella HOM05D001126 ORTHO05D000991 1.5e-14 83.2 197 35.0
Medtr4g101050 Medicago truncatula HOM05D001126 ORTHO05D000991 1.5e-14 83.2 199 30.7
CARHR173770 Cardamine hirsuta HOM05D001126 ORTHO05D000991 2.0e-14 82.8 195 33.3
Potri.001G123100 Populus trichocarpa HOM05D001126 ORTHO05D000991 2.0e-14 82.8 194 32.5
Potri.003G110700 Populus trichocarpa HOM05D001126 ORTHO05D000991 2.0e-14 82.8 195 33.8
Carub.0006s0159 Capsella rubella HOM05D001126 ORTHO05D000991 2.5e-14 82.4 166 37.3
ClCG04G005920 Citrullus lanatus HOM05D001126 ORTHO05D000991 2.5e-14 82.4 197 32.5
Sabra01G0094800 Salix brachista HOM05D001126 ORTHO05D000991 2.5e-14 82.4 195 32.8
CAN.G1218.15 Capsicum annuum HOM05D001126 ORTHO05D000991 5.7e-14 81.3 194 33.5
CAN.G1218.16 Capsicum annuum HOM05D001126 ORTHO05D000991 5.7e-14 81.3 194 33.0
Thhalv10024505m.g Eutrema salsugineum HOM05D001126 ORTHO05D000991 7.4e-14 80.9 197 34.5
Cc08_g12650 Coffea canephora HOM05D001126 ORTHO05D000991 2.2e-13 79.3 199 31.2
AT4G17250 Arabidopsis thaliana HOM05D001126 ORTHO05D000991 2.8e-13 79.0 197 34.5
BcaB04g18408 Brassica carinata HOM05D001126 ORTHO05D000991 3.7e-13 78.6 198 33.8
Lsat_1_v5_gn_8_153161 Lactuca sativa HOM05D001126 ORTHO05D000991 8.2e-13 77.4 195 31.3
PGSC0003DMG400004804 Solanum tuberosum HOM05D001126 ORTHO05D000991 8.2e-13 77.4 194 32.0
CARHR223880 Cardamine hirsuta HOM05D001126 ORTHO05D000991 1.4e-12 76.6 197 33.5
SGA_v2.0_scaffold120G32874 Striga asiatica HOM05D001126 ORTHO05D000991 1.4e-12 76.6 190 30.5
Sopen08g027250 Solanum pennellii HOM05D001126 ORTHO05D000991 2.4e-12 75.9 194 31.4
BraA10t45330Z Brassica rapa HOM05D001126 ORTHO05D000991 3.1e-12 75.5 199 30.7
HanXRQChr13g0396021 Helianthus annuus HOM05D001126 ORTHO05D000991 6.9e-12 74.3 195 31.3
Solyc08g078780.2 Solanum lycopersicum HOM05D001126 ORTHO05D000991 6.9e-12 74.3 194 30.9
C09p73890 Brassica napus HOM05D001126 ORTHO05D000991 9.1e-12 73.9 198 30.3
BolC9t60122H Brassica oleracea HOM05D001126 ORTHO05D000991 9.1e-12 73.9 198 30.3
Sp7g16880 Schrenkiella parvula HOM05D001126 ORTHO05D000991 9.1e-12 73.9 199 32.7
CDE12G0182 Ceratophyllum demersum HOM05D001126 ORTHO05D000991 1.2e-11 73.6 195 29.7
CDE12G0257 Ceratophyllum demersum HOM05D001126 ORTHO05D000991 2.0e-11 72.8 195 29.2
PGR031G2523 Punica granatum HOM05D001126 ORTHO05D000991 2.0e-11 72.8 193 31.6
FvH4_3g26860 Fragaria vesca HOM05D001126 ORTHO05D000991 3.4e-11 72.0 140 37.1
BcaC07g38042 Brassica carinata HOM05D001126 ORTHO05D000991 4.5e-11 71.6 198 31.3
BcaC07g38045 Brassica carinata HOM05D001126 ORTHO05D000991 4.5e-11 71.6 198 31.3
BolC8t48446H Brassica oleracea HOM05D001126 ORTHO05D000991 4.5e-11 71.6 198 31.3
Sopen08g027240 Solanum pennellii HOM05D001126 ORTHO05D000991 4.5e-11 71.6 194 30.9
A08p12970 Brassica napus HOM05D001126 ORTHO05D000991 1.0e-10 70.5 198 30.8
BraA08t33280Z Brassica rapa HOM05D001126 ORTHO05D000991 1.0e-10 70.5 198 30.8
Cpa.g.sc29.141 Carica papaya HOM05D001126 ORTHO05D000991 1.0e-10 70.5 195 30.8
Solyc08g078770.1 Solanum lycopersicum HOM05D001126 ORTHO05D000991 1.3e-10 70.1 194 30.4
MELO3C019137.2 Cucumis melo HOM05D001126 ORTHO05D000991 3.8e-10 68.6 197 31.0
Thhalv10026993m.g Eutrema salsugineum HOM05D001126 ORTHO05D000991 6.5e-10 67.8 199 31.2
PGSC0003DMG400004805 Solanum tuberosum HOM05D001126 ORTHO05D000991 8.5e-10 67.4 194 30.4
A10p32930 Brassica napus HOM05D001126 ORTHO05D000991 1.4e-09 66.6 172 30.2
Dinv28074 Davidia involucrata HOM05D001126 ORTHO05D000991 4.2e-09 65.1 152 34.2
CDE09G0098 Ceratophyllum demersum HOM05D001126 ORTHO05D000991 1.2e-08 63.5 191 27.7
Phvul.003G219732 Phaseolus vulgaris HOM05D001126 ORTHO05D000991 1.6e-08 63.2 72 44.4
Nitab4.5_0008481g0030 Nicotiana tabacum HOM05D001126 ORTHO05D000991 2.1e-08 62.8 74 48.6
Oeu046405.1 Olea europaea HOM05D001126 ORTHO05D000991 2.7e-08 62.4 70 47.1
BcaNung03273 Brassica carinata HOM05D001126 ORTHO05D000991 3.6e-08 62.0 72 45.8
CDE01G0817 Ceratophyllum demersum HOM05D001126 ORTHO05D000991 3.6e-08 62.0 160 33.8
Oeu019594.1 Olea europaea HOM05D001126 ORTHO05D000991 6.1e-08 61.2 72 47.2
Oeu019589.1 Olea europaea HOM05D001126 ORTHO05D000991 7.9e-08 60.8 70 47.1
Lj2C216T3 Lonicera japonica HOM05D001126 ORTHO05D000991 1.4e-07 60.1 74 43.2
Eucgr.D02063 Eucalyptus grandis HOM05D001126 ORTHO05D000991 2.3e-07 59.3 187 30.5
MBI04_g36032_MAGBIO Magnolia biondii HOM05D001126 ORTHO05D000991 2.3e-07 59.3 196 25.0
CDE12G0197 Ceratophyllum demersum HOM05D001126 ORTHO05D000991 3.0e-07 58.9 195 26.2
ECA233G0141 Erigeron canadensis HOM05D001126 ORTHO05D000991 3.0e-07 58.9 72 43.1
Gohir.A12G217800 Gossypium hirsutum HOM05D001126 ORTHO05D000991 3.0e-07 58.9 69 50.7
Gohir.D12G220300 Gossypium hirsutum HOM05D001126 ORTHO05D000991 3.0e-07 58.9 69 50.7
CsaV3_4G029220 Cucumis sativus L. HOM05D001126 ORTHO05D000991 5.1e-07 58.2 42 71.4
Hma1.2p1_3207F.1_g333980 Hydrangea macrophylla HOM05D001126 ORTHO05D000991 5.1e-07 58.2 148 32.4
Dinv06802 Davidia involucrata HOM05D001126 ORTHO05D000991 6.7e-07 57.8 152 31.6
Dinv06808 Davidia involucrata HOM05D001126 ORTHO05D000991 6.7e-07 57.8 152 31.6
Aqoxy2G03581 Aquilegia oxysepala HOM05D001126 ORTHO05D000991 8.8e-07 57.4 182 28.0
Aqoxy2G00820 Aquilegia oxysepala HOM05D001126 ORTHO05D000991 5.7e-06 54.7 76 42.1
ECA233G4998 Erigeron canadensis HOM05D001126 ORTHO05D000991 7.4e-06 54.3 70 41.4


User provided reference genes

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