Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.4e-134 483.0 248 100.0
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 4.4e-117 424.9 248 89.5
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 8.8e-110 400.6 250 83.6
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 8.2e-108 394.0 250 82.4
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.2e-106 390.2 248 79.8
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 7.7e-106 387.5 248 80.6
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.7e-105 386.3 248 79.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.7e-105 386.3 248 80.2
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.2e-105 386.0 248 79.8
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.2e-105 386.0 248 79.8
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.2e-105 386.0 248 79.8
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.9e-104 382.9 248 79.8
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.2e-104 382.1 247 79.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 5.5e-104 381.3 250 79.2
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.7e-103 379.0 248 78.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 4.7e-103 378.3 248 77.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 6.1e-103 377.9 248 78.2
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.0e-102 377.1 248 78.2
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 8.8e-102 374.0 251 78.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 2.6e-101 372.5 248 79.8
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.3e-100 370.2 250 78.4
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.3e-100 370.2 249 76.7
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.2e-100 369.4 248 77.0
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.7e-100 368.6 248 76.2
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 6.3e-100 367.9 248 75.8
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.3e-100 367.5 248 75.8
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-99 367.1 248 73.4
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.4e-99 365.9 248 77.0
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.4e-99 365.9 248 75.4
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.1e-99 365.2 248 73.4
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 4.1e-99 365.2 251 77.7
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.4e-99 364.8 248 73.0
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.2e-98 363.6 247 76.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.2e-98 363.6 256 77.0
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.7e-98 362.5 247 76.5
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.7e-98 362.5 250 76.4
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.5e-98 362.1 249 75.9
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.5e-98 362.1 249 75.9
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.0e-97 360.5 248 75.8
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 2.9e-97 359.0 248 76.2
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.9e-97 359.0 249 75.1
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.9e-97 359.0 247 75.3
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 5.0e-97 358.2 248 75.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.1e-96 357.1 267 72.7
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.9e-96 356.3 251 72.9
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.9e-96 356.3 251 74.9
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 2.5e-96 355.9 248 73.8
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.5e-96 355.9 258 72.9
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 3.3e-96 355.5 248 74.6
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.2e-96 355.1 248 74.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 7.2e-96 354.4 253 75.1
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.6e-95 353.2 248 74.2
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.6e-95 353.2 250 76.4
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.0e-94 350.5 249 74.7
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.3e-94 349.4 251 72.1
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.0e-94 348.6 249 74.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 6.8e-94 347.8 250 73.6
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 8.9e-94 347.4 249 73.5
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 3.4e-93 345.5 248 73.0
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.4e-93 345.1 246 74.4
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 7.5e-93 344.4 252 72.2
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 7.5e-93 344.4 246 72.0
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.2e-92 342.8 251 74.1
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.8e-92 342.4 252 70.6
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.7e-92 342.0 249 71.9
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.3e-92 341.3 249 73.5
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 8.3e-92 340.9 247 72.1
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.1e-91 340.5 249 72.3
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.1e-91 340.5 249 72.3
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.4e-91 340.1 250 72.0
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 4.1e-91 338.6 250 71.6
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 4.1e-91 338.6 247 70.9
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-90 337.0 248 70.6
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.6e-90 336.7 245 70.2
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 2.0e-90 336.3 217 76.5
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.9e-90 334.7 246 70.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 5.9e-90 334.7 257 69.6
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.9e-90 334.7 249 71.5
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.0e-89 334.0 246 69.9
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.7e-89 333.2 247 70.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.7e-89 333.2 246 70.3
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.9e-89 332.4 245 69.4
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.9e-89 332.4 245 69.8
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.9e-89 332.4 249 69.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 2.9e-89 332.4 249 70.3
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.8e-89 332.0 248 71.0
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 6.6e-89 331.3 245 70.6
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 6.6e-89 331.3 245 69.8
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 6.6e-89 331.3 246 70.3
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 6.6e-89 331.3 247 70.0
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 6.6e-89 331.3 246 71.5
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.1e-88 330.5 245 70.6
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.3e-88 328.9 233 74.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.2e-87 327.0 247 69.6
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.2e-87 327.0 259 69.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.6e-87 326.6 254 70.5
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.8e-87 325.9 245 69.4
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.6e-87 325.5 245 69.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 4.7e-87 325.1 313 60.1
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.8e-86 323.2 243 71.6
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.8e-86 323.2 243 70.0
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.3e-86 322.8 238 73.5
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 3.1e-86 322.4 254 68.9
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 4.0e-86 322.0 249 67.1
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.2e-86 321.6 237 70.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.8e-86 321.2 237 70.0
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.2e-85 320.5 256 67.6
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-85 320.5 251 68.1
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.7e-84 316.6 324 57.4
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 2.2e-84 316.2 238 69.3
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.9e-84 315.8 246 68.3
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.9e-84 315.8 246 68.3
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.9e-84 315.8 246 68.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.9e-84 315.8 256 67.2
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.7e-84 315.5 256 66.8
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 4.9e-84 315.1 264 66.7
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.9e-83 313.2 214 74.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 3.2e-83 312.4 246 67.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 6.0e-82 308.1 252 65.9
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.0e-81 307.4 243 69.1
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 2.3e-81 306.2 252 65.1
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 5.0e-81 305.1 239 69.9
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.9e-80 303.1 254 65.0
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.5e-80 302.8 240 67.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-78 297.0 233 66.5
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 4.0e-78 295.4 246 66.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.0e-78 295.4 200 73.0
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.2e-78 295.0 231 67.1
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 9.8e-77 290.8 247 62.8
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.2e-76 289.7 217 68.7
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 4.1e-75 285.4 387 46.8
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.1e-73 278.5 251 59.0
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.9e-68 262.7 252 57.5
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 3.7e-68 262.3 257 56.4
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.9e-68 261.9 239 61.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.5e-66 255.8 234 59.0
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.3e-65 253.1 247 59.1
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.3e-64 248.8 152 78.9
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 5.6e-64 248.4 147 80.3
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 3.4e-61 239.2 249 53.0
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 4.4e-61 238.8 252 53.6
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.9e-59 233.4 136 81.6
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-56 223.8 169 68.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.5e-56 223.0 169 68.6
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.6e-56 221.9 217 58.5
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.8e-55 219.5 249 50.6
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-49 200.7 117 85.5
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 7.3e-48 194.9 270 44.1
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.6e-47 193.7 113 81.4
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-47 193.4 195 56.9
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 1.1e-46 191.0 288 42.0
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.8e-37 158.7 129 68.2
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 5.5e-35 152.1 130 66.2
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.8e-33 147.1 276 36.6
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.6e-31 140.6 270 36.7
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 4.0e-30 136.0 98 74.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.9e-25 119.4 95 61.1
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.9e-24 117.1 96 64.6
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 9.7e-24 114.8 87 60.9
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.8e-23 113.2 69 78.3
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-17 94.4 75 66.7
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 8.8e-17 91.7 75 65.3
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.5e-16 90.9 121 48.8
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.3e-15 87.8 90 45.6
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.3e-15 87.8 110 37.3
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.3e-15 87.8 78 60.3
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.7e-12 77.4 98 49.0
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 6.1e-10 68.9 160 32.5
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 7.9e-10 68.6 81 45.7
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 7.9e-10 68.6 135 40.7
Cfa020859 Carpinus fangiana HOM05D021855 ORTHO05D004837 1.8e-06 57.4 64 57.8


User provided reference genes

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