Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 2.4e-107 392.1 188 100.0
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 1.2e-77 293.5 270 60.7
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 4.7e-71 271.6 270 55.6
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 8.0e-71 270.8 270 55.2
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 2.3e-70 269.2 270 53.3
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 5.2e-70 268.1 270 54.8
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 8.3e-68 260.8 263 54.8
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.4e-67 260.0 269 52.8
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 3.1e-67 258.8 263 54.8
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 3.1e-67 258.8 263 54.4
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.1e-67 258.5 263 54.8
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 5.4e-67 258.1 263 54.4
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 7.0e-67 257.7 270 53.3
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 7.0e-67 257.7 263 53.6
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 7.0e-67 257.7 263 54.8
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 9.1e-67 257.3 268 53.7
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.2e-66 256.9 270 53.0
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 1.6e-66 256.5 269 52.0
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.6e-66 256.5 270 53.3
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.6e-66 256.5 264 53.8
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.0e-66 256.1 264 53.4
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 2.0e-66 256.1 269 52.4
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 3.5e-66 255.4 269 52.0
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.5e-66 255.0 263 53.6
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.0e-65 253.8 270 51.1
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 1.0e-65 253.8 269 51.7
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.7e-65 253.1 260 53.8
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 1.7e-65 253.1 213 63.8
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.3e-65 252.7 270 52.2
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.9e-65 252.3 269 52.0
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 2.9e-65 252.3 265 52.5
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 3.8e-65 251.9 270 52.6
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.8e-65 251.9 265 52.5
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 3.8e-65 251.9 269 51.7
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 5.0e-65 251.5 270 52.2
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 5.0e-65 251.5 270 52.2
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 6.5e-65 251.1 263 53.2
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 6.5e-65 251.1 263 53.6
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 8.6e-65 250.8 270 52.2
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 8.6e-65 250.8 270 52.2
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 8.6e-65 250.8 269 51.7
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 8.6e-65 250.8 264 52.7
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 1.5e-64 250.0 264 53.0
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.9e-64 249.6 263 52.9
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 1.9e-64 249.6 264 51.5
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 3.2e-64 248.8 260 52.3
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 3.2e-64 248.8 270 51.5
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 7.2e-64 247.7 270 51.5
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 1.2e-63 246.9 270 51.1
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.2e-63 246.9 269 50.2
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.6e-63 246.5 265 51.7
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-63 246.5 263 52.1
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.6e-63 246.5 213 61.5
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 2.1e-63 246.1 270 51.1
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 2.8e-63 245.7 263 51.3
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 4.7e-63 245.0 270 51.5
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 6.1e-63 244.6 276 50.7
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 8.0e-63 244.2 270 50.4
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.4e-62 243.4 264 51.9
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 3.0e-62 242.3 270 51.9
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 4.0e-62 241.9 269 50.6
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 6.8e-62 241.1 262 50.0
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 6.8e-62 241.1 262 50.4
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 3.4e-61 238.8 249 53.0
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 7.5e-61 237.7 265 50.2
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.3e-60 236.9 260 50.8
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 4.9e-60 235.0 263 49.4
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 6.3e-60 234.6 262 49.6
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 6.3e-60 234.6 263 49.8
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.1e-59 233.8 275 48.0
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 4.1e-59 231.9 263 49.4
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 5.4e-59 231.5 259 48.3
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 5.4e-59 231.5 262 49.2
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 9.2e-59 230.7 270 48.9
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.0e-58 229.6 263 48.7
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 2.0e-58 229.6 264 47.0
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 2.7e-58 229.2 268 48.1
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 4.5e-58 228.4 264 48.1
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 7.8e-58 227.6 261 49.8
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.3e-57 226.9 267 49.8
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 2.9e-57 225.7 270 48.5
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 5.0e-57 224.9 259 48.6
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 6.6e-57 224.6 251 50.6
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 6.6e-57 224.6 268 49.3
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 1.1e-56 223.8 262 47.3
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.5e-56 223.4 263 47.5
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 1.9e-56 223.0 258 49.6
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 9.5e-56 220.7 211 56.9
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 6.1e-55 218.0 263 47.5
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 8.0e-55 217.6 224 51.8
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 3.0e-54 215.7 158 67.1
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 3.0e-54 215.7 158 69.0
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 3.0e-54 215.7 263 46.8
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.0e-54 215.3 272 47.4
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 8.9e-54 214.2 158 67.1
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 8.9e-54 214.2 154 68.2
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 7.5e-53 211.1 158 67.1
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 2.2e-52 209.5 253 49.8
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.1e-51 207.2 226 49.1
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.2e-50 203.8 272 45.2
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.3e-49 200.3 220 51.4
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 2.5e-48 196.1 264 42.4
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 9.5e-48 194.1 262 41.6
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 2.1e-47 193.0 223 48.9
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-45 186.8 264 44.7
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.5e-45 186.8 264 44.7
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 1.6e-42 176.8 252 41.3
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 6.8e-38 161.4 146 58.2
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 5.8e-37 158.3 190 48.9
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.1e-35 154.1 224 42.9
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.4e-35 153.7 220 45.5
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 1.9e-32 143.3 157 49.0
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 8.1e-31 137.9 164 41.5
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 2.3e-25 119.8 182 37.4
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.4e-22 109.8 97 60.8
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 3.2e-19 99.4 180 38.3
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.5e-13 80.5 81 51.9
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 4.9e-12 75.5 124 39.5
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 2.4e-11 73.2 66 57.6
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 9.3e-11 71.2 56 62.5
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.3e-09 67.4 89 41.6
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.3e-08 62.8 91 39.6
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 4.8e-07 58.9 33 72.7


User provided reference genes

Program Settings