Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 7.4e-83 310.5 154 100.0
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 4.0e-68 261.5 144 86.1
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 6.8e-68 260.8 150 83.3
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 8.8e-68 260.4 149 83.2
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 1.2e-67 260.0 154 79.2
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 2.0e-67 259.2 146 84.9
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 3.4e-67 258.5 154 81.8
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 3.4e-67 258.5 150 80.7
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 3.4e-67 258.5 150 82.0
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 4.4e-67 258.1 150 82.7
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 5.7e-67 257.7 150 84.0
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 7.5e-67 257.3 145 82.8
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 7.5e-67 257.3 146 82.9
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 9.8e-67 256.9 151 81.5
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 2.2e-66 255.8 150 81.3
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 2.2e-66 255.8 149 79.2
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 2.8e-66 255.4 151 79.5
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 3.7e-66 255.0 151 80.8
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 6.3e-66 254.2 148 78.4
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 8.3e-66 253.8 154 77.3
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 1.1e-65 253.4 144 81.9
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.8e-65 252.7 150 80.0
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 2.4e-65 252.3 144 84.0
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 2.4e-65 252.3 154 77.3
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 3.1e-65 251.9 151 78.8
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 3.1e-65 251.9 149 78.5
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 7.0e-65 250.8 150 81.3
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 7.0e-65 250.8 149 78.5
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 9.1e-65 250.4 149 76.5
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 9.1e-65 250.4 154 77.3
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 2.0e-64 249.2 152 78.3
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 3.5e-64 248.4 146 79.5
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 4.5e-64 248.1 147 79.6
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 7.7e-64 247.3 144 78.5
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.3e-63 246.5 149 75.8
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 1.7e-63 246.1 151 76.2
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 1.7e-63 246.1 152 75.0
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 2.3e-63 245.7 151 75.5
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 2.3e-63 245.7 146 79.5
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 2.3e-63 245.7 146 79.5
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 2.3e-63 245.7 144 80.6
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 3.8e-63 245.0 149 75.2
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 3.8e-63 245.0 149 75.2
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 6.6e-63 244.2 146 78.1
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 6.6e-63 244.2 151 73.5
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 8.6e-63 243.8 148 76.4
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 8.6e-63 243.8 152 76.3
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 1.1e-62 243.4 141 80.9
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 1.1e-62 243.4 152 75.7
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 1.1e-62 243.4 146 78.1
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 1.5e-62 243.0 148 78.4
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 1.5e-62 243.0 149 75.8
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 1.9e-62 242.7 148 74.3
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 1.9e-62 242.7 154 74.7
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 2.5e-62 242.3 151 76.2
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 3.3e-62 241.9 153 73.2
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 4.2e-62 241.5 146 76.0
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 4.2e-62 241.5 145 78.6
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 4.2e-62 241.5 148 77.7
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 4.2e-62 241.5 148 75.7
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 4.2e-62 241.5 154 72.1
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 5.5e-62 241.1 152 75.0
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 5.5e-62 241.1 153 76.5
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 5.5e-62 241.1 144 77.1
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 1.2e-61 240.0 151 71.5
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.6e-61 239.6 152 74.3
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 2.8e-61 238.8 149 74.5
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 2.8e-61 238.8 152 75.0
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 2.8e-61 238.8 153 72.5
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.7e-61 238.0 142 79.6
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 6.1e-61 237.7 146 74.7
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 6.1e-61 237.7 148 73.0
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 6.1e-61 237.7 152 75.0
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 1.4e-60 236.5 153 71.9
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 2.3e-60 235.7 149 73.2
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 3.0e-60 235.3 146 74.7
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.5e-59 233.0 154 70.1
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 1.5e-59 233.0 146 74.7
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 3.4e-59 231.9 138 79.7
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 4.4e-59 231.5 150 70.0
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 7.5e-59 230.7 148 72.3
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.3e-58 229.9 150 72.7
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 1.7e-58 229.6 142 74.6
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.7e-58 228.4 154 69.5
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 8.3e-58 227.3 148 74.3
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 1.6e-56 223.0 142 71.8
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 5.9e-56 221.1 150 68.7
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 1.0e-55 220.3 144 69.4
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 2.3e-55 219.2 146 70.5
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 2.9e-55 218.8 148 69.6
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 3.9e-55 218.4 148 69.6
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.9e-54 216.1 148 70.3
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 1.9e-54 216.1 154 65.6
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 4.3e-54 214.9 148 68.2
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 5.6e-54 214.5 148 67.6
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 1.2e-53 213.4 148 67.6
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 1.6e-53 213.0 150 65.3
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 2.1e-53 212.6 148 66.2
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 2.1e-53 212.6 148 66.2
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 2.8e-53 212.2 148 66.2
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 6.1e-53 211.1 148 65.5
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 8.0e-53 210.7 148 64.9
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 1.0e-52 210.3 148 66.2
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 1.0e-52 210.3 148 66.2
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 1.0e-52 210.3 148 64.9
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 8.9e-52 207.2 148 65.5
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 8.9e-52 207.2 148 64.9
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 9.8e-51 203.8 142 64.1
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 3.2e-49 198.7 146 61.6
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 1.2e-48 196.8 120 77.5
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 3.5e-48 195.3 150 58.7
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 5.0e-47 191.4 151 58.3
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.5e-46 189.9 120 74.2
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 5.6e-46 188.0 148 62.2
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 4.7e-45 184.9 123 71.5
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.2e-40 170.2 148 52.7
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 7.8e-40 167.5 131 59.5
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 1.0e-39 167.2 147 52.4
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 3.9e-39 165.2 148 48.6
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 5.1e-39 164.9 97 76.3
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 2.5e-38 162.5 149 51.0
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 9.5e-38 160.6 112 67.9
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 4.7e-37 158.3 144 52.8
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 4.0e-36 155.2 137 59.9
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 1.2e-32 143.7 142 52.8
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 6.0e-32 141.4 100 64.0
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 2.8e-29 132.5 141 48.9
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 6.2e-29 131.3 147 44.2
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 8.1e-29 131.0 99 58.6
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 2.9e-26 122.5 149 43.0
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 4.2e-25 118.6 152 46.1
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 1.6e-24 116.7 74 73.0
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 3.3e-22 109.0 85 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 4.3e-22 108.6 84 56.0


User provided reference genes

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