Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.5e-189 666.0 333 100.0
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 4.9e-132 474.9 314 76.1
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.5e-112 410.2 317 66.6
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 3.7e-111 405.6 312 66.7
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.4e-110 403.7 317 65.9
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.4e-110 403.7 317 65.9
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.9e-110 401.4 317 65.3
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.9e-110 401.4 317 65.3
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.9e-110 401.4 317 65.6
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.2e-99 365.9 261 69.0
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 3.9e-97 359.0 309 59.2
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.3e-96 355.9 310 58.4
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 3.6e-90 335.9 308 56.2
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.0e-84 317.8 310 53.2
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.7e-84 317.0 277 56.7
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.9e-84 316.2 300 53.0
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 2.5e-83 313.2 281 54.8
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 2.3e-81 306.6 237 63.7
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 6.8e-81 305.1 311 52.7
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 2.0e-80 303.5 281 53.0
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.7e-79 300.4 300 51.0
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 4.8e-79 298.9 293 50.9
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.1e-78 297.7 317 48.9
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.8e-78 297.0 282 53.5
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 4.5e-77 292.4 300 52.7
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 5.9e-77 292.0 319 52.4
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 3.3e-75 286.2 278 52.2
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 1.2e-74 284.3 317 47.3
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 6.8e-73 278.5 296 48.3
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.5e-72 277.3 301 49.8
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.4e-72 275.8 303 47.9
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 5.7e-72 275.4 303 47.5
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.2e-71 273.5 271 50.6
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.8e-71 273.1 303 47.2
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.7e-71 272.7 304 48.0
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 6.3e-71 271.9 273 50.2
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 8.3e-71 271.6 282 47.2
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 1.1e-70 271.2 287 48.1
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 1.4e-70 270.8 250 54.0
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.8e-70 270.4 302 49.3
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 9.2e-70 268.1 264 50.8
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.6e-69 267.3 255 52.2
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 2.7e-69 266.5 299 46.2
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 3.5e-69 266.2 256 52.7
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 7.8e-69 265.0 270 51.5
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 2.9e-68 263.1 286 47.2
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 2.9e-68 263.1 290 48.6
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 5.0e-68 262.3 260 50.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 1.1e-67 261.2 314 44.6
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.5e-67 260.0 299 45.8
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 2.5e-67 260.0 313 47.0
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 5.6e-67 258.8 255 52.9
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 8.9e-65 251.5 245 51.4
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.5e-64 250.8 271 48.7
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 1.5e-64 250.8 264 48.5
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 5.8e-64 248.8 285 47.0
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 9.8e-64 248.1 309 43.4
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-63 247.7 304 44.4
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.7e-63 247.3 264 46.6
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 2.2e-63 246.9 292 46.2
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 3.7e-63 246.1 281 46.6
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 4.9e-63 245.7 304 44.1
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 4.9e-63 245.7 260 49.2
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 6.4e-63 245.4 304 44.1
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 8.3e-63 245.0 264 46.6
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.1e-62 244.6 235 49.8
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 5.4e-62 242.3 237 51.1
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.2e-61 241.1 312 42.9
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.2e-61 241.1 264 46.2
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.5e-61 239.6 252 47.6
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 3.0e-60 236.5 264 46.2
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 3.0e-60 236.5 264 46.2
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 3.0e-60 236.5 264 46.2
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 3.9e-60 236.1 277 42.6
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 6.6e-60 235.3 279 45.9
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.1e-59 234.6 301 45.2
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 9.5e-59 231.5 264 44.7
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.6e-58 229.6 253 46.2
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.0e-58 228.4 253 45.8
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.1e-57 228.0 272 44.1
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 5.2e-57 225.7 249 45.8
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 8.9e-57 224.9 263 44.1
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 4.4e-56 222.6 263 45.2
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-54 216.5 259 43.2
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-54 216.1 252 44.4
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 5.4e-54 215.7 264 46.6
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.1e-54 215.3 259 43.2
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-53 214.2 259 43.2
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-53 213.8 259 43.2
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-53 213.8 259 43.2
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-53 213.4 259 43.2
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-53 213.0 259 42.9
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-53 213.0 259 42.9
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.6e-53 212.6 255 43.5
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.8e-53 211.8 259 42.9
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 3.9e-52 209.5 300 42.7
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.6e-52 208.4 259 42.9
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 8.6e-52 208.4 287 40.1
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.5e-51 207.6 282 41.1
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 3.3e-51 206.5 292 42.1
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 4.3e-51 206.1 269 44.6
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.7e-50 202.6 217 51.6
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 3.1e-49 199.9 176 55.1
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.9e-49 198.4 245 43.7
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.5e-48 197.6 301 39.9
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 4.9e-47 192.6 296 39.9
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 4.9e-47 192.6 227 45.8
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 6.4e-47 192.2 269 41.3
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 8.3e-47 191.8 313 39.9
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 8.3e-47 191.8 278 42.1
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.1e-46 191.4 314 41.1
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.4e-46 191.0 240 45.0
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.9e-46 190.7 287 40.1
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 3.2e-46 189.9 311 37.9
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.1e-46 189.5 155 61.3
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 9.2e-46 188.3 275 42.5
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.2e-45 188.0 269 41.6
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.2e-45 188.0 269 41.6
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 6.0e-45 185.7 312 39.7
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 7.8e-45 185.3 269 40.9
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 1.4e-41 174.5 219 43.8
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-41 173.7 164 49.4
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 5.2e-41 172.6 220 42.3
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-40 171.4 164 49.4
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-40 171.4 164 49.4
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.8e-40 169.1 168 48.2
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 5.8e-40 169.1 245 40.0
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.7e-39 167.5 245 40.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.2e-38 163.3 206 42.7
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 4.2e-38 162.9 267 36.7
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.3e-34 151.4 294 33.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.8e-33 147.5 277 35.0
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.4e-32 142.9 127 58.3
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.3e-27 126.3 135 46.7
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.6e-27 125.2 196 38.8
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 2.6e-24 117.1 187 40.1
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 1.7e-23 114.4 200 33.5
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-22 111.3 149 40.9
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.9e-22 110.9 102 54.9
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.0e-20 105.1 213 32.4
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 2.1e-18 97.4 200 33.0
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 6.7e-12 75.9 87 41.4
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 4.3e-11 73.2 72 48.6


User provided reference genes

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