Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.8e-94 349.7 247 100.0
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 4.9e-52 208.8 163 71.8
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.6e-34 150.6 157 59.9
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 2.7e-34 149.8 157 59.9
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 8.7e-33 144.8 157 58.6
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.9e-32 143.7 157 59.2
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.5e-32 143.3 188 50.5
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.3e-32 142.9 157 58.6
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 5.3e-30 135.6 187 49.7
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 2.6e-29 133.3 190 46.8
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 3.8e-28 129.4 182 45.6
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.4e-28 128.3 198 47.0
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.1e-27 127.9 182 45.1
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.9e-27 127.1 212 42.0
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.9e-27 127.1 181 44.8
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 7.1e-27 125.2 181 44.8
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.6e-26 124.0 216 40.3
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 2.7e-26 123.2 156 49.4
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 2.3e-25 120.2 182 42.9
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 6.7e-25 118.6 213 39.9
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.1e-24 117.9 186 46.8
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 1.9e-24 117.1 178 47.2
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 1.9e-24 117.1 178 47.2
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 4.3e-24 115.9 183 46.4
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 4.3e-24 115.9 188 38.3
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.6e-23 114.0 167 43.7
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 2.8e-23 113.2 223 39.5
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 3.7e-23 112.8 198 40.4
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 4.8e-23 112.5 161 46.6
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 4.8e-23 112.5 198 39.4
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 6.2e-23 112.1 198 41.4
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.4e-22 110.9 198 38.9
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 1.4e-22 110.9 170 43.5
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.8e-22 110.5 217 39.6
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 3.1e-22 109.8 196 38.8
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 5.3e-22 109.0 167 44.9
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 9.0e-22 108.2 169 46.2
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 2.6e-21 106.7 197 38.1
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 2.6e-21 106.7 200 41.0
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 2.6e-21 106.7 161 44.1
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 3.4e-21 106.3 186 41.4
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 4.5e-21 105.9 205 42.4
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 4.5e-21 105.9 186 41.4
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 5.8e-21 105.5 205 41.5
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 7.6e-21 105.1 203 40.4
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 7.6e-21 105.1 222 36.0
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.0e-20 104.8 175 43.4
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 1.7e-20 104.0 222 35.6
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 2.2e-20 103.6 189 39.2
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 6.5e-20 102.1 202 38.1
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.9e-19 100.5 188 39.9
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 4.2e-19 99.4 181 39.8
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 7.1e-19 98.6 168 42.3
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 7.1e-19 98.6 193 39.4
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.6e-18 97.4 199 37.2
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 2.1e-18 97.1 185 43.2
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 4.6e-18 95.9 178 38.2
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.0e-17 94.7 202 39.6
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 1.3e-17 94.4 188 36.2
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.8e-17 94.0 199 36.7
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 3.0e-17 93.2 200 38.5
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.1e-17 92.4 198 37.4
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 5.1e-17 92.4 178 42.7
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 6.7e-17 92.0 176 40.9
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 8.7e-17 91.7 181 40.3
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.1e-16 91.3 202 36.1
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.9e-16 90.5 202 39.1
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 1.9e-16 90.5 212 33.0
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 2.5e-16 90.1 98 54.1
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 4.3e-16 89.4 206 36.9
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 5.7e-16 89.0 178 39.3
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.3e-15 87.8 185 37.8
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.8e-15 86.7 184 37.0
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 6.3e-15 85.5 199 35.7
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 6.3e-15 85.5 196 38.3
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.4e-14 84.3 161 39.1
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 9.0e-14 81.6 79 58.2
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 9.0e-14 81.6 174 37.4
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 9.0e-14 81.6 203 34.5
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 1.2e-13 81.3 187 37.4
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 3.4e-13 79.7 193 37.8
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 5.9e-13 79.0 189 36.0
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 5.9e-13 79.0 89 52.8
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.6e-13 78.6 171 36.8
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 1.7e-12 77.4 212 32.5
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 2.9e-12 76.6 205 33.7
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 6.5e-12 75.5 184 38.6
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 1.1e-11 74.7 189 34.4
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.1e-11 74.7 204 30.4
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 1.1e-11 74.7 189 36.0
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 1.4e-11 74.3 196 33.7
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 1.9e-11 73.9 113 42.5
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 3.2e-11 73.2 186 33.3
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 7.2e-11 72.0 192 34.9
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 1.2e-10 71.2 162 35.8
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.2e-10 71.2 187 32.6
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.6e-10 70.9 78 48.7
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.1e-10 70.5 204 29.4
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 2.7e-10 70.1 186 32.8
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 4.6e-10 69.3 166 33.7
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 4.6e-10 69.3 181 34.3
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 4.6e-10 69.3 128 36.7
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 1.0e-09 68.2 159 34.6
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 1.0e-09 68.2 159 32.7
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.8e-09 67.4 161 34.8
AUR62018697 Chenopodium quinoa HOM05D006310 ORTHO05D007768 1.8e-09 67.4 38 81.6
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 2.3e-09 67.0 157 33.1
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 3.9e-09 66.2 184 33.2
Zm00001eb024820 Zea mays HOM05D006310 ORTHO05D007768 3.9e-09 66.2 40 65.0
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 5.1e-09 65.9 163 34.4
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.9e-08 63.9 184 29.3
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.9e-08 63.9 61 54.1
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 9.7e-08 61.6 38 73.7
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.2e-07 60.5 81 44.4
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 2.2e-07 60.5 189 34.4
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 2.8e-07 60.1 173 32.4
SEGI_00832 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 2.8e-07 60.1 37 67.6
SEGI_05061 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 3.7e-07 59.7 155 32.3
SEGI_05294 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.7e-07 59.7 75 46.7
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 4.8e-07 59.3 66 47.0
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 6.3e-07 58.9 84 44.0
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 8.2e-07 58.5 176 32.4
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 8.2e-07 58.5 79 40.5
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 8.2e-07 58.5 59 49.2
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 1.1e-06 58.2 80 43.8
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.1e-06 58.2 38 71.1
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 1.4e-06 57.8 177 31.6
Manes.04G113400 Manihot esculenta HOM05D001903 ORTHO05D001847 1.4e-06 57.8 75 44.0
SEGI_13914 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.4e-06 57.8 35 68.6
SEGI_03197 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 1.8e-06 57.4 56 51.8
Gohir.D06G100100 Gossypium hirsutum HOM05D001903 ORTHO05D001847 2.4e-06 57.0 77 45.5
Potri.018G130300 Populus trichocarpa HOM05D001903 ORTHO05D001847 2.4e-06 57.0 62 46.8
SEGI_04018 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 2.4e-06 57.0 34 70.6
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 3.1e-06 56.6 126 36.5
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 3.1e-06 56.6 64 46.9
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.1e-06 56.6 75 42.7
Migut.D01072 Erythranthe guttata HOM05D001903 ORTHO05D001847 3.1e-06 56.6 89 40.4
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 3.1e-06 56.6 55 43.6
Sabra18G0110600 Salix brachista HOM05D001903 ORTHO05D001847 3.1e-06 56.6 62 48.4
A02p23820 Brassica napus HOM05D001903 ORTHO05D001847 4.1e-06 56.2 105 37.1
BraA02t07373Z Brassica rapa HOM05D001903 ORTHO05D001847 4.1e-06 56.2 105 37.1
Gorai.010G115000 Gossypium raimondii HOM05D001903 ORTHO05D001847 4.1e-06 56.2 124 37.1
Medtr4g010250 Medicago truncatula HOM05D001903 ORTHO05D001847 4.1e-06 56.2 46 58.7
Potri.018G130100 Populus trichocarpa HOM05D001903 ORTHO05D001847 4.1e-06 56.2 61 49.2
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 4.1e-06 56.2 61 47.5
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.3e-06 55.8 73 41.1
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 5.3e-06 55.8 79 49.4
Psat4g038040 Pisum sativum HOM05D001903 ORTHO05D001847 5.3e-06 55.8 128 33.6
SEGI_20120 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 5.3e-06 55.8 40 60.0
THA.LOC104803660 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 5.3e-06 55.8 107 38.3
Ah.01g020680 Amaranthus hybridus HOM05D001903 ORTHO05D001847 6.9e-06 55.5 37 67.6
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 6.9e-06 55.5 51 52.9
SGA_v2.0_scaffold37G14772 Striga asiatica HOM05D001903 ORTHO05D001847 6.9e-06 55.5 85 42.4
Gohir.A06G098216 Gossypium hirsutum HOM05D001903 ORTHO05D001847 9.0e-06 55.1 77 44.2
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 9.0e-06 55.1 51 52.9


User provided reference genes

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