Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1036700 Malus domestica HOM05D000173 ORTHO05D005736 3.4e-46 188.0 95 100.0
MD11G1045700 Malus domestica HOM05D000173 ORTHO05D005736 3.6e-35 151.4 82 92.7
Prupe.6G034100 Prunus persica HOM05D000173 ORTHO05D005736 1.0e-34 149.8 82 91.5
MD03G1042500 Malus domestica HOM05D000173 ORTHO05D005736 1.4e-34 149.4 82 90.2
FAN25G2199 Fragaria x ananassa HOM05D000173 ORTHO05D005736 2.6e-33 145.2 82 87.8
FvH4_3g41660 Fragaria vesca HOM05D000173 ORTHO05D005736 4.4e-33 144.4 82 86.6
FAN11G3973 Fragaria x ananassa HOM05D000173 ORTHO05D005736 4.4e-33 144.4 82 86.6
MD11G1044700 Malus domestica HOM05D000173 ORTHO05D005736 5.7e-33 144.1 80 91.2
FAN16G3599 Fragaria x ananassa HOM05D000173 ORTHO05D005736 7.4e-33 143.7 82 86.6
Gohir.A13G128700 Gossypium hirsutum HOM05D000173 ORTHO05D005736 7.4e-33 143.7 88 79.5
Duzib268G0641 Durio zibethinus HOM05D000173 ORTHO05D005736 1.3e-32 142.9 82 84.1
Gohir.D13G132100 Gossypium hirsutum HOM05D000173 ORTHO05D005736 1.3e-32 142.9 82 84.1
Gorai.013G148100 Gossypium raimondii HOM05D000173 ORTHO05D005736 1.3e-32 142.9 82 84.1
Lalb_Chr09g0334651 Lupinus albus HOM05D000173 ORTHO05D005736 1.3e-32 142.9 82 82.9
MD11G1045300 Malus domestica HOM05D000173 ORTHO05D005736 1.7e-32 142.5 80 90.0
Manes.05G204900 Manihot esculenta HOM05D000173 ORTHO05D005736 2.2e-32 142.1 82 82.9
Cpa.g.sc12.72 Carica papaya HOM05D000173 ORTHO05D005736 4.8e-32 141.0 80 85.0
Glyma.04G112600 Glycine max HOM05D000173 ORTHO05D005736 4.8e-32 141.0 82 82.9
Thecc.07G002000 Theobroma cacao HOM05D000173 ORTHO05D005736 6.3e-32 140.6 82 81.7
Atru.chr2.3890 Acer truncatum HOM05D000173 ORTHO05D005736 8.2e-32 140.2 82 80.5
Glyma.16G096700 Glycine max HOM05D000173 ORTHO05D005736 8.2e-32 140.2 82 84.1
FAN21G0887 Fragaria x ananassa HOM05D000173 ORTHO05D005736 1.1e-31 139.8 80 86.2
QL08p000620 Quercus lobata HOM05D000173 ORTHO05D005736 1.1e-31 139.8 82 81.7
RcHm_v2.0_Chr5g0074751 Rosa chinensis HOM05D000173 ORTHO05D005736 1.1e-31 139.8 82 81.7
arahy.Tifrunner.gnm1.ann1.1AZN13 Arachis hypogaea HOM05D000173 ORTHO05D005736 1.4e-31 139.4 80 80.0
arahy.Tifrunner.gnm1.ann1.YXC3CU Arachis hypogaea HOM05D000173 ORTHO05D005736 1.4e-31 139.4 80 80.0
VMungo1080G0826 Vigna mungo HOM05D000173 ORTHO05D005736 1.8e-31 139.0 82 80.5
TAR626G0284 Trochodendron aralioides HOM05D000173 ORTHO05D005736 2.4e-31 138.7 82 81.7
Actinidia03673 Actinidia chinensis HOM05D000173 ORTHO05D005736 3.1e-31 138.3 82 82.9
CANSAT11G1741 Cannabis sativa HOM05D000173 ORTHO05D005736 3.1e-31 138.3 82 84.1
vmacro09801 Vaccinium macrocarpon HOM05D000173 ORTHO05D005736 3.1e-31 138.3 82 80.5
Aqoxy4G02260 Aquilegia oxysepala HOM05D000173 ORTHO05D005736 4.1e-31 137.9 82 81.7
Ciclev10008155m.g Citrus clementina HOM05D000173 ORTHO05D005736 4.1e-31 137.9 82 80.5
Psat5g231680 Pisum sativum HOM05D000173 ORTHO05D005736 4.1e-31 137.9 80 80.0
Rhsim04G0007300 Rhododendron simsii HOM05D000173 ORTHO05D005736 4.1e-31 137.9 82 81.7
arahy.Tifrunner.gnm1.ann1.9SE8JW Arachis hypogaea HOM05D000173 ORTHO05D005736 5.3e-31 137.5 82 80.5
arahy.Tifrunner.gnm1.ann1.D2KAQB Arachis hypogaea HOM05D000173 ORTHO05D005736 5.3e-31 137.5 82 80.5
Cfa016956 Carpinus fangiana HOM05D000173 ORTHO05D005736 5.3e-31 137.5 82 79.3
ClCG10G004520 Citrullus lanatus HOM05D000173 ORTHO05D005736 5.3e-31 137.5 82 81.7
Phvul.005G003800 Phaseolus vulgaris HOM05D000173 ORTHO05D005736 5.3e-31 137.5 82 78.0
Lj4g0017123 Lotus japonicus HOM05D000173 ORTHO05D005736 1.2e-30 136.3 82 79.3
Medtr3g010170 Medicago truncatula HOM05D000173 ORTHO05D005736 1.2e-30 136.3 80 80.0
Phvul.003G274900 Phaseolus vulgaris HOM05D000173 ORTHO05D005736 1.6e-30 136.0 82 81.7
Potri.001G471700 Populus trichocarpa HOM05D000173 ORTHO05D005736 1.6e-30 136.0 82 79.3
Ca_14141_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 2.0e-30 135.6 82 78.0
CsaV3_3G004340 Cucumis sativus L. HOM05D000173 ORTHO05D005736 2.0e-30 135.6 82 80.5
PGR083G1684 Punica granatum HOM05D000173 ORTHO05D005736 2.0e-30 135.6 82 78.0
GSVIVG01014840001 Vitis vinifera HOM05D000173 ORTHO05D005736 2.0e-30 135.6 82 80.5
Sc10g0008190 Simmondsia chinensis HOM05D000173 ORTHO05D005736 2.6e-30 135.2 82 81.7
CSS0004771 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005736 3.5e-30 134.8 82 80.5
CSS0020852 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005736 3.5e-30 134.8 82 80.5
MBI15_g26862_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D005736 3.5e-30 134.8 82 80.5
Ah.06g184110 Amaranthus hybridus HOM05D000173 ORTHO05D005736 4.5e-30 134.4 82 80.5
MELO3C014127.2 Cucumis melo HOM05D000173 ORTHO05D005736 4.5e-30 134.4 82 80.5
TWI39G0957 Tripterygium wilfordii HOM05D000173 ORTHO05D005736 4.5e-30 134.4 80 81.2
AT5G56180 Arabidopsis thaliana HOM05D000173 ORTHO05D005736 5.9e-30 134.0 82 78.0
Lalb_Chr04g0259451 Lupinus albus HOM05D000173 ORTHO05D005736 7.7e-30 133.7 82 75.6
AL8G31810 Arabidopsis lyrata HOM05D000173 ORTHO05D005736 1.0e-29 133.3 88 73.9
Dinv40911 Davidia involucrata HOM05D000173 ORTHO05D005736 1.0e-29 133.3 80 78.8
AUR62035629 Chenopodium quinoa HOM05D000173 ORTHO05D005736 1.3e-29 132.9 82 79.3
SalBow8G1092 Salvia bowleyana HOM05D000173 ORTHO05D005736 1.3e-29 132.9 82 76.8
Thhalv10013450m.g Eutrema salsugineum HOM05D000173 ORTHO05D005736 1.7e-29 132.5 82 78.0
Lj3g0003303 Lotus japonicus HOM05D000173 ORTHO05D005736 1.7e-29 132.5 82 78.0
Sed0017311 Sechium edule HOM05D000173 ORTHO05D005736 1.7e-29 132.5 82 78.0
Dinv19646 Davidia involucrata HOM05D000173 ORTHO05D005736 2.2e-29 132.1 82 80.5
Sabra16G0320200 Salix brachista HOM05D000173 ORTHO05D005736 2.2e-29 132.1 82 76.8
TPR.G16712 Trifolium pratense HOM05D000173 ORTHO05D005736 2.2e-29 132.1 80 77.5
BcaB08g35985 Brassica carinata HOM05D000173 ORTHO05D005736 2.9e-29 131.7 82 78.0
ATR0751G083 Amborella trichopoda HOM05D000173 ORTHO05D005736 3.8e-29 131.3 82 78.0
THA.LOC104811699 Tarenaya hassleriana HOM05D000173 ORTHO05D005736 3.8e-29 131.3 82 76.8
Sp6g18030 Schrenkiella parvula HOM05D000173 ORTHO05D005736 5.0e-29 131.0 82 76.8
Potri.001G471400 Populus trichocarpa HOM05D000173 ORTHO05D005736 6.5e-29 130.6 82 78.0
Medtr8g070520 Medicago truncatula HOM05D000173 ORTHO05D005736 8.5e-29 130.2 82 76.8
PSO782G1015 Papaver somniferum HOM05D000173 ORTHO05D005736 1.1e-28 129.8 82 75.6
MSTRG.7039 Avicennia marina HOM05D000173 ORTHO05D005736 1.5e-28 129.4 82 75.6
CARHR269580 Cardamine hirsuta HOM05D000173 ORTHO05D005736 1.5e-28 129.4 82 76.8
Ca_22541_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 1.5e-28 129.4 82 75.6
Lj1A900G25 Lonicera japonica HOM05D000173 ORTHO05D005736 1.9e-28 129.0 82 76.8
Psat4g111560 Pisum sativum HOM05D000173 ORTHO05D005736 1.9e-28 129.0 82 75.6
CDE03G0171 Ceratophyllum demersum HOM05D000173 ORTHO05D005736 2.5e-28 128.6 82 74.4
TPR.G6164 Trifolium pratense HOM05D000173 ORTHO05D005736 2.5e-28 128.6 82 74.4
Migut.M01585 Erythranthe guttata HOM05D000173 ORTHO05D005736 3.2e-28 128.3 82 73.2
Carub.0008s1650 Capsella rubella HOM05D000173 ORTHO05D005736 5.5e-28 127.5 82 73.2
Eucgr.F01992 Eucalyptus grandis HOM05D000173 ORTHO05D005736 5.5e-28 127.5 82 75.6
A02p09320 Brassica napus HOM05D000173 ORTHO05D005736 1.6e-27 125.9 86 73.3
C02p15450 Brassica napus HOM05D000173 ORTHO05D005736 1.6e-27 125.9 86 73.3
BolC2t07659H Brassica oleracea HOM05D000173 ORTHO05D005736 1.6e-27 125.9 86 73.3
SEGI_17334 Sequoiadendron giganteum HOM05D000173 ORTHO05D005736 1.6e-27 125.9 82 74.4
ECA246G0903 Erigeron canadensis HOM05D000173 ORTHO05D005736 2.1e-27 125.6 82 72.0
PSO541G2314 Papaver somniferum HOM05D000173 ORTHO05D005736 2.1e-27 125.6 82 75.6
Peaxi162Scf00232g00532 Petunia axillaris HOM05D000173 ORTHO05D005736 2.1e-27 125.6 82 72.0
unitig_8.g4598 Utricularia gibba HOM05D000173 ORTHO05D005736 3.6e-27 124.8 82 70.7
HPP92_015174 Vanilla planifolia HOM05D000173 ORTHO05D005736 3.6e-27 124.8 82 72.0
PSO675G5735 Papaver somniferum HOM05D000173 ORTHO05D005736 6.1e-27 124.0 82 74.4
Sabra16G0320000 Salix brachista HOM05D000173 ORTHO05D005736 6.1e-27 124.0 90 70.0
Nitab4.5_0008062g0010 Nicotiana tabacum HOM05D000173 ORTHO05D005736 8.0e-27 123.6 82 72.0
Solyc07g066120.3 Solanum lycopersicum HOM05D000173 ORTHO05D005736 8.0e-27 123.6 82 72.0
Sopen07g034300 Solanum pennellii HOM05D000173 ORTHO05D005736 8.0e-27 123.6 82 72.0
PGSC0003DMG400022148 Solanum tuberosum HOM05D000173 ORTHO05D005736 8.0e-27 123.6 82 72.0
Oeu005538.1 Olea europaea HOM05D000173 ORTHO05D005736 1.0e-26 123.2 82 74.4
CAN.G623.72 Capsicum annuum HOM05D000173 ORTHO05D005736 1.8e-26 122.5 82 70.7
CAN.G337.84 Capsicum annuum HOM05D000173 ORTHO05D005736 2.3e-26 122.1 82 70.7
Cc05_g15670 Coffea canephora HOM05D000173 ORTHO05D005736 2.3e-26 122.1 82 73.2
BraA02t05994Z Brassica rapa HOM05D000173 ORTHO05D005736 3.0e-26 121.7 82 75.6
Lj8C183T9 Lonicera japonica HOM05D000173 ORTHO05D005736 3.0e-26 121.7 80 75.0
Lsat_1_v5_gn_5_540 Lactuca sativa HOM05D000173 ORTHO05D005736 5.2e-26 120.9 82 72.0
Zm00001eb066950 Zea mays HOM05D000173 ORTHO05D005736 5.2e-26 120.9 80 66.2
Actinidia20424 Actinidia chinensis HOM05D000173 ORTHO05D005736 6.7e-26 120.6 88 72.7
HanXRQChr08g0232901 Helianthus annuus HOM05D000173 ORTHO05D005736 1.2e-25 119.8 82 68.3
ECA236G0787 Erigeron canadensis HOM05D000173 ORTHO05D005736 2.0e-25 119.0 82 68.3
BcaB08g35984 Brassica carinata HOM05D000173 ORTHO05D005736 2.6e-25 118.6 108 59.3
Nn1g07638 Nelumbo nucifera HOM05D000173 ORTHO05D005736 4.4e-25 117.9 130 52.3
DCAR_017608 Daucus carota HOM05D000173 ORTHO05D005736 5.7e-25 117.5 82 69.5
BcaC04g20131 Brassica carinata HOM05D000173 ORTHO05D005736 9.7e-25 116.7 89 68.5
C09p47390 Brassica napus HOM05D000173 ORTHO05D005736 9.7e-25 116.7 89 68.5
BolC9t57593H Brassica oleracea HOM05D000173 ORTHO05D005736 9.7e-25 116.7 89 68.5
Hma1.2p1_0321F.1_g124320 Hydrangea macrophylla HOM05D000173 ORTHO05D005736 2.2e-24 115.5 82 70.7
MD00G1070700 Malus domestica HOM05D000173 ORTHO05D005736 2.8e-24 115.2 62 95.2
VMungo0251G2140 Vigna mungo HOM05D000173 ORTHO05D005736 6.3e-24 114.0 136 50.0
HanXRQChr11g0346941 Helianthus annuus HOM05D000173 ORTHO05D005736 1.1e-23 113.2 82 67.1
HanXRQChr11g0335511 Helianthus annuus HOM05D000173 ORTHO05D005736 5.3e-23 110.9 82 64.6
Lsat_1_v5_gn_9_88501 Lactuca sativa HOM05D000173 ORTHO05D005736 7.0e-23 110.5 82 64.6
COL.COLO4_07785 Corchorus olitorius HOM05D000173 ORTHO05D005736 3.5e-22 108.2 63 84.1
AUR62017175 Chenopodium quinoa HOM05D000173 ORTHO05D005736 2.9e-21 105.1 64 81.2
SMO119G0010 Selaginella moellendorffii HOM05D000173 ORTHO05D005736 6.5e-21 104.0 80 61.2
Mapoly0120s0035 Marchantia polymorpha HOM05D000173 ORTHO05D005736 2.5e-20 102.1 82 57.3
Lsat_1_v5_gn_7_115441 Lactuca sativa HOM05D000173 ORTHO05D005736 5.5e-20 100.9 82 62.2
AagrBONN_evm.TU.Sc2ySwM_344.4947 Anthoceros agrestis HOM05D000173 ORTHO05D005736 1.2e-17 93.2 81 51.9
Nitab4.5_0000152g0070 Nicotiana tabacum HOM05D000173 ORTHO05D005736 1.2e-17 93.2 63 71.4
SGA_v2.0_scaffold7G03547 Striga asiatica HOM05D000173 ORTHO05D005736 1.3e-16 89.7 56 76.8
Aa31LG3G12090 Aethionema arabicum HOM05D000173 ORTHO05D005736 2.2e-16 89.0 73 67.1
Sopen12g023940 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-13 77.8 86 47.7
Rhsim04G0077300 Rhododendron simsii HOM05D000173 ORTHO05D340215 2.8e-08 62.0 35 80.0
Ca_14094_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 6.3e-08 60.8 33 84.8


User provided reference genes

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