Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.2e-132 475.7 258 100.0
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.4e-73 280.4 174 82.8
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 7.6e-64 248.1 175 72.0
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 4.8e-58 228.8 173 68.2
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.1e-57 227.6 173 67.6
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.1e-57 226.1 173 67.1
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.7e-51 205.3 164 65.9
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.6e-50 203.8 172 61.0
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.4e-49 199.9 177 61.6
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.6e-48 194.9 172 62.2
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.0e-47 194.5 181 58.0
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.8e-47 192.6 178 58.4
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.1e-46 191.0 172 61.6
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 7.2e-46 188.3 180 58.9
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.2e-46 188.3 158 62.7
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 7.2e-46 188.3 181 57.5
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 9.3e-46 188.0 177 59.9
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 3.5e-45 186.0 176 59.1
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 6.1e-45 185.3 177 55.9
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.8e-44 183.7 180 56.7
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.3e-44 183.3 179 57.0
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.1e-44 182.2 176 56.8
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 6.7e-44 181.8 179 57.5
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.5e-43 180.6 177 55.9
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.5e-43 180.6 173 55.5
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 2.5e-43 179.9 173 57.2
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 3.3e-43 179.5 167 59.3
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 7.4e-43 178.3 188 52.7
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 9.7e-43 177.9 166 59.0
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.6e-42 177.2 174 56.3
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.6e-42 177.2 174 56.3
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.6e-42 177.2 174 56.3
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.2e-42 176.8 175 56.0
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 6.3e-42 175.3 174 54.6
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.1e-41 174.5 173 56.1
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 2.4e-41 173.3 172 57.6
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 2.4e-41 173.3 172 57.6
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.4e-41 173.3 174 54.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.4e-41 173.3 170 57.6
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 4.1e-41 172.6 166 58.4
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 1.2e-40 171.0 170 54.7
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.5e-40 170.6 168 53.6
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 3.4e-40 169.5 175 56.6
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 3.4e-40 169.5 163 58.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.4e-40 169.5 175 56.0
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 4.5e-40 169.1 177 54.8
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.5e-40 169.1 177 54.2
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 4.5e-40 169.1 166 55.4
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.9e-40 168.7 185 51.9
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.8e-39 166.0 176 54.5
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.8e-39 166.0 182 52.2
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.0e-39 165.6 182 52.2
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.1e-38 164.5 160 56.9
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 4.2e-38 162.5 175 51.4
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 5.5e-38 162.2 175 53.1
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 7.2e-38 161.8 160 56.9
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 9.4e-38 161.4 169 52.7
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 9.4e-38 161.4 172 54.1
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.7e-37 159.8 180 51.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 3.6e-37 159.5 178 52.2
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 3.6e-37 159.5 168 53.6
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 4.6e-37 159.1 155 56.8
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.4e-36 157.5 171 51.5
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.8e-36 157.1 170 50.6
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 5.1e-36 155.6 174 52.3
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.5e-35 154.1 171 50.9
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.5e-35 154.1 166 53.0
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.0e-35 153.7 174 51.7
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.3e-34 151.0 182 48.9
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.7e-34 150.6 171 49.7
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 2.2e-34 150.2 171 49.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.8e-34 149.1 170 49.4
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.1e-33 147.9 81 90.1
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 4.1e-33 146.0 176 48.9
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-32 144.4 171 48.5
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.2e-32 144.4 165 51.5
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.2e-32 144.4 171 48.0
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.7e-31 140.6 166 51.2
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 5.0e-31 139.0 159 49.1
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.1e-30 137.9 182 48.4
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 3.2e-30 136.3 149 52.3
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.2e-30 136.0 178 49.4
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 7.2e-30 135.2 142 52.8
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 2.0e-27 127.1 136 52.2
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 6.3e-26 122.1 145 52.4
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 8.2e-26 121.7 115 55.7
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.1e-25 121.3 175 41.1
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.4e-25 120.9 166 49.4
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.2e-24 117.9 117 55.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 5.9e-24 115.5 122 50.8
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.2e-23 113.6 166 41.6
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.2e-23 113.6 106 57.5
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.9e-23 113.2 178 39.9
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.1e-22 111.3 124 50.0
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.5e-22 110.9 123 49.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.5e-22 110.9 165 45.5
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.2e-22 109.8 162 41.4
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.2e-22 109.4 181 38.7
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-21 107.8 119 51.3
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.6e-21 106.3 119 50.4
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 6.1e-21 105.5 187 40.1
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 6.7e-20 102.1 120 50.8
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 5.3e-17 92.4 104 51.0
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 7.7e-16 88.6 83 59.0
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.5e-14 84.3 77 61.0
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.2e-11 74.7 81 55.6
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.0e-11 73.9 119 40.3
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 9.8e-11 71.6 54 63.0
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-10 70.5 67 62.7
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 2.2e-10 70.5 87 44.8
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.2e-10 70.5 51 64.7
MD09G1215500 Malus domestica HOM05D004949 ORTHO05D006006 1.4e-09 67.8 37 89.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.0e-09 65.5 35 85.7
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.5e-08 63.2 42 71.4
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 4.5e-08 62.8 164 31.7
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.0e-07 61.6 31 80.6
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.3e-07 61.2 177 32.2
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.9e-07 60.1 109 41.3
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.9e-07 60.1 139 38.1
PGSC0003DMG400017506 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.5e-06 57.8 51 58.8
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 7.2e-06 55.5 147 32.0


User provided reference genes

Program Settings