Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.6e-169 599.4 311 100.0
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 2.1e-124 449.5 283 83.7
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.1e-107 391.7 278 70.9
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.5e-106 389.4 275 73.8
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.3e-105 387.1 281 75.4
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 9.1e-104 380.9 285 68.4
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 9.1e-104 380.9 285 68.1
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 5.9e-103 378.3 274 73.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.9e-102 375.9 283 70.0
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.0e-102 375.2 285 69.1
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.4e-101 373.6 285 68.1
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 4.2e-101 372.1 285 68.8
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 5.5e-101 371.7 272 72.4
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.6e-100 370.2 285 66.3
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.1e-100 369.8 274 70.1
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 2.7e-100 369.4 285 66.7
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 2.7e-100 369.4 286 67.1
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 4.7e-100 368.6 284 65.8
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 6.1e-100 368.2 275 69.5
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.5e-98 363.6 298 65.8
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 2.0e-98 363.2 285 66.0
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 7.4e-98 361.3 285 64.9
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.2e-97 359.8 274 66.4
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 2.2e-97 359.8 285 62.8
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.8e-97 358.6 288 67.0
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.4e-96 357.1 273 67.8
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.4e-96 357.1 274 65.3
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 9.1e-96 354.4 274 65.7
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 9.1e-96 354.4 285 64.6
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.5e-95 353.6 285 64.9
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.0e-94 350.9 285 61.8
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.3e-94 350.5 285 62.5
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.9e-94 349.4 284 63.0
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 7.2e-93 344.7 291 61.2
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.2e-92 344.0 255 71.8
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.2e-92 344.0 274 66.1
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.3e-91 339.7 286 62.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.0e-91 339.3 285 60.4
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 8.8e-91 337.8 274 62.4
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.5e-90 337.0 276 61.6
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 7.4e-90 334.7 274 63.5
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 8.2e-89 331.3 261 66.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.4e-88 329.7 274 60.6
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 5.3e-88 328.6 285 59.3
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 7.0e-88 328.2 285 60.7
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.2e-87 327.4 285 60.0
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.2e-87 327.4 285 58.9
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.0e-87 326.6 285 60.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 3.5e-87 325.9 285 60.0
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.5e-87 325.9 274 62.0
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 7.7e-87 324.7 274 60.6
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 6.5e-86 321.6 285 59.3
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.2e-85 319.3 275 58.9
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 3.2e-85 319.3 228 69.7
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 4.2e-85 318.9 275 62.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 4.2e-85 318.9 278 61.9
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.6e-84 317.0 285 60.4
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.6e-84 317.0 294 57.8
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.6e-84 315.8 285 59.6
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.6e-84 315.8 275 58.2
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.4e-83 313.9 264 61.4
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.4e-83 313.9 233 70.8
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 5.2e-83 312.0 272 59.2
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 5.2e-83 312.0 287 58.5
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 4.4e-82 308.9 276 58.3
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.3e-81 307.4 276 56.9
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.2e-81 306.6 276 57.6
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 4.8e-81 305.4 498 39.8
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 8.3e-81 304.7 274 57.7
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.1e-80 304.3 276 56.5
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 9.1e-80 301.2 276 57.2
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.6e-79 300.4 276 56.2
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.6e-79 300.4 276 56.2
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.6e-79 300.4 285 58.9
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 4.5e-79 298.9 286 53.8
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 5.9e-79 298.5 276 55.1
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.0e-78 297.7 285 54.7
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.2e-78 296.6 276 55.4
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 2.9e-78 296.2 276 55.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 3.8e-78 295.8 276 55.4
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 5.0e-78 295.4 274 58.4
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 5.0e-78 295.4 276 54.7
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 3.6e-76 289.3 285 55.8
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.8e-75 287.0 294 54.8
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.0e-74 283.5 286 51.7
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 4.1e-72 275.8 203 68.0
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 7.0e-72 275.0 192 71.4
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.7e-71 273.1 277 53.4
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.7e-70 270.4 300 50.7
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 8.6e-70 268.1 276 51.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.1e-68 263.5 285 53.0
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.0e-67 261.2 191 67.5
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 5.2e-67 258.8 297 47.5
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.2e-66 257.7 275 50.9
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.5e-66 257.3 252 54.4
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.6e-66 256.5 276 50.4
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.4e-66 255.8 285 51.6
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 7.8e-63 245.0 275 52.4
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.7e-62 243.8 271 50.2
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 5.6e-61 238.8 234 55.1
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.8e-60 236.5 299 44.8
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.2e-57 226.9 278 46.8
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 2.9e-57 226.5 292 46.2
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 3.5e-55 219.5 289 49.5
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.9e-53 213.8 185 58.4
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.8e-51 207.2 285 43.5
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.2e-50 204.5 160 61.9
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.1e-47 193.7 205 52.7
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 9.5e-45 184.9 316 37.3
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.7e-44 182.6 159 58.5
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.4e-43 181.0 294 43.5
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.3e-38 163.7 122 66.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 4.3e-37 159.5 127 63.0
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-35 154.8 124 62.9
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 4.9e-33 146.0 249 39.4
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.1e-32 144.8 115 64.3
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.9e-32 144.1 117 59.8
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.5e-21 107.8 394 29.9
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.1e-20 104.0 84 63.1
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 2.1e-20 104.0 127 45.7
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.4e-19 101.3 66 72.7
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 8.4e-17 92.0 353 26.9
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 3.0e-14 83.6 308 27.9
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 3.9e-14 83.2 125 36.8
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.1e-07 60.8 35 80.0
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.6e-07 59.7 57 50.9
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.6e-07 59.7 57 50.9
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.6e-07 59.7 57 50.9
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.7e-06 55.5 57 49.1
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.7e-06 55.5 57 49.1


User provided reference genes

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