Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 3.3e-261 904.4 440 100.0
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 6.1e-247 857.1 438 93.2
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.5e-245 850.1 438 93.4
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 5.7e-237 823.9 441 89.1
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.8e-236 821.6 436 88.5
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 3.1e-235 818.1 436 88.5
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 5.4e-235 817.4 438 87.4
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.0e-234 815.5 438 86.8
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.0e-234 815.5 434 86.9
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.7e-234 815.1 434 88.7
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.5e-234 814.3 434 88.5
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 7.7e-234 813.5 451 85.8
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 6.6e-233 810.4 434 88.2
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.9e-232 808.9 434 88.0
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.8e-231 805.1 438 85.2
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 6.1e-231 803.9 432 87.0
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 6.1e-231 803.9 432 87.0
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 5.2e-230 800.8 438 84.7
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.5e-229 799.3 433 86.8
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.5e-229 799.3 429 86.2
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.0e-229 798.9 437 86.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.4e-229 798.1 437 86.3
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 5.7e-229 797.3 438 84.5
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.3e-228 796.2 429 85.8
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.2e-228 795.4 437 86.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.2e-228 795.4 436 86.5
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.8e-228 795.0 437 84.9
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 3.7e-228 794.7 440 83.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 4.9e-228 794.3 437 84.2
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.8e-227 792.3 437 85.4
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.8e-227 792.3 437 84.7
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 5.4e-227 790.8 437 84.0
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.2e-226 789.6 438 83.1
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.0e-226 788.9 438 84.7
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.7e-226 788.5 437 84.2
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.7e-225 785.8 438 84.0
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.3e-225 785.4 437 84.9
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 2.3e-225 785.4 438 83.8
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.1e-224 783.1 434 83.6
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.9e-224 782.3 433 84.3
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.6e-224 780.8 433 83.8
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 9.5e-224 780.0 437 82.6
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.6e-223 779.2 435 85.3
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.8e-223 778.5 432 85.4
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 3.6e-223 778.1 438 83.3
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.4e-222 776.2 436 83.3
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 3.1e-222 775.0 437 82.4
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.7e-220 769.2 438 81.7
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.1e-219 766.5 497 74.2
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 7.0e-219 763.8 438 81.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 9.2e-219 763.5 437 81.7
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.2e-218 763.1 437 83.1
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.7e-218 761.9 439 81.1
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 4.6e-218 761.1 472 76.5
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 7.8e-218 760.4 438 81.7
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 7.8e-218 760.4 437 81.0
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.0e-217 760.0 438 81.7
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.0e-217 760.0 437 80.5
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.0e-217 760.0 432 80.8
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.3e-217 759.6 437 81.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.7e-217 759.2 439 81.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 8.6e-217 756.9 445 80.2
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.1e-216 756.5 439 81.3
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 1.9e-216 755.7 433 80.4
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 2.5e-216 755.4 438 81.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 2.5e-216 755.4 438 81.3
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 4.3e-216 754.6 433 81.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 4.3e-216 754.6 435 80.2
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 5.6e-216 754.2 436 80.3
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 7.3e-216 753.8 433 80.8
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.2e-215 753.1 445 79.8
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.6e-215 752.7 438 80.8
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.1e-215 752.3 427 82.0
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 3.6e-215 751.5 428 82.5
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 4.7e-215 751.1 438 80.1
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 8.0e-215 750.4 427 82.2
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 8.0e-215 750.4 438 80.8
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 8.9e-214 746.9 438 79.2
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.2e-213 746.5 440 78.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 9.8e-213 743.4 436 79.4
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 8.3e-212 740.3 442 79.4
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.1e-211 740.0 417 84.2
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.2e-210 736.5 508 71.1
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.1e-210 735.7 412 83.7
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 5.6e-208 727.6 433 77.1
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 5.8e-205 717.6 401 83.0
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.3e-204 716.5 419 80.9
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.9e-204 715.3 433 77.4
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.9e-204 715.3 526 67.9
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.7e-204 714.9 439 76.3
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 8.6e-201 703.7 391 84.4
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.5e-200 702.2 406 80.3
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 7.3e-200 700.7 434 75.8
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.0e-198 694.9 427 77.3
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.9e-196 688.7 433 75.1
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.8e-194 680.6 440 73.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.7e-193 679.5 439 72.7
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.5e-192 675.6 433 72.7
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 9.6e-192 673.7 445 70.8
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 6.2e-191 671.0 437 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 8.1e-191 670.6 426 73.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 2.1e-186 656.0 427 71.7
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.9e-185 651.7 436 73.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.3e-183 646.7 437 67.0
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 6.2e-183 644.4 340 89.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 7.6e-181 637.5 427 71.0
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.8e-180 635.2 432 67.6
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 5.1e-177 624.8 339 87.0
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 5.1e-177 624.8 329 88.4
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 8.7e-177 624.0 436 67.0
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 2.0e-173 612.8 342 83.9
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.2e-170 603.6 436 65.6
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.5e-170 602.1 387 74.2
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.4e-166 589.3 441 63.9
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.3e-164 583.6 354 78.5
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.9e-164 582.4 441 62.8
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.0e-162 574.7 439 66.5
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 7.9e-162 574.3 426 62.2
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.7e-161 570.9 439 62.9
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 2.0e-157 559.7 296 88.2
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 8.5e-148 527.7 337 73.6
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.6e-146 523.5 352 70.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.1e-145 518.5 432 59.0
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 4.7e-138 495.4 382 65.2
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 8.0e-130 468.0 432 53.2
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 2.2e-124 449.9 352 67.6
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.1e-110 404.4 236 80.5
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.3e-108 397.5 223 85.2
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 6.8e-97 358.6 228 75.9
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 4.2e-78 296.2 194 71.6
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.0e-76 291.6 157 87.9
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.1e-73 280.0 151 84.1
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.0e-68 265.0 197 68.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 3.9e-68 263.1 145 85.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.4e-62 244.6 134 86.6
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-56 224.6 234 53.8
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.3e-51 206.5 112 84.8
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.5e-48 198.0 107 81.3
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 4.8e-42 176.4 137 65.0
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.6e-37 161.4 88 85.2
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.8e-36 157.9 204 45.1
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-33 148.7 93 74.2
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 9.1e-33 145.6 165 49.1
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.6e-32 144.1 82 85.4
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.4e-25 121.7 87 65.5
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.6e-24 118.2 257 34.2
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 2.9e-23 114.0 67 71.6
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.2e-21 108.6 57 80.7
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 8.8e-20 102.4 72 61.1
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 9.7e-19 99.0 62 74.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 7.7e-16 89.4 121 46.3
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-13 81.6 36 91.7
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 4.7e-13 80.1 38 86.8
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.4e-09 68.6 81 48.1
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 4.1e-09 67.0 47 68.1
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 9.1e-09 65.9 69 53.6
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 5.0e-07 60.1 249 25.7
SEGI_10744 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 1.5e-06 58.5 219 26.0
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 3.2e-06 57.4 35 65.7
Hund07657 Selenicereus undatus HOM05D000617 ORTHO05D000478 9.4e-06 55.8 247 24.3


User provided reference genes

Program Settings