Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 1.6e-185 652.5 316 100.0
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 8.8e-155 550.4 316 83.9
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 4.8e-137 491.5 316 76.6
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.1e-136 490.3 316 76.3
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 3.1e-136 488.8 316 75.9
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.3e-134 483.4 316 75.0
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 7.2e-133 477.6 340 70.3
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 1.8e-128 463.0 309 71.2
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 1.3e-126 456.8 319 69.0
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 4.7e-124 448.4 335 66.0
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 5.2e-123 444.9 305 65.2
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 1.5e-122 443.4 295 71.2
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 2.0e-122 443.0 297 70.0
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 3.4e-122 442.2 307 68.7
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 5.7e-122 441.4 297 70.7
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 2.2e-121 439.5 310 68.4
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 2.2e-121 439.5 297 68.7
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 2.2e-121 439.5 307 67.1
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 2.0e-119 433.0 314 65.9
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 3.5e-119 432.2 300 67.7
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 1.0e-118 430.6 301 68.4
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 1.0e-118 430.6 300 68.7
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 1.3e-118 430.3 293 70.0
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 2.9e-118 429.1 298 68.5
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 5.0e-118 428.3 303 68.3
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 8.6e-118 427.6 306 66.0
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 1.1e-117 427.2 295 67.5
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 1.9e-117 426.4 291 70.8
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 2.5e-117 426.0 313 63.9
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 7.3e-117 424.5 298 67.1
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 7.3e-117 424.5 298 67.1
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 1.2e-116 423.7 314 64.0
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 3.6e-116 422.2 316 65.2
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 1.0e-115 420.6 296 65.9
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 1.0e-115 420.6 296 66.9
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 1.8e-115 419.9 295 66.8
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 2.3e-115 419.5 295 66.4
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 3.1e-115 419.1 316 64.9
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 3.1e-115 419.1 320 62.5
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 4.0e-115 418.7 345 60.3
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 6.8e-115 417.9 316 64.2
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 1.2e-114 417.2 304 65.1
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 5.8e-114 414.8 304 64.1
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 7.5e-114 414.5 315 62.2
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 1.3e-113 413.7 310 64.8
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 1.7e-113 413.3 302 66.6
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 2.9e-113 412.5 313 61.7
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 6.4e-113 411.4 300 65.0
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 1.4e-112 410.2 305 62.6
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 1.4e-112 410.2 306 63.1
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 1.4e-112 410.2 300 64.3
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 2.4e-112 409.5 286 67.8
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 3.2e-112 409.1 298 65.4
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 4.1e-112 408.7 308 63.3
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 4.1e-112 408.7 300 64.3
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 5.4e-112 408.3 316 62.3
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 1.2e-111 407.1 299 63.9
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 1.7e-110 403.3 300 63.7
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 2.3e-110 402.9 295 65.8
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 5.0e-110 401.7 309 64.1
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 1.5e-109 400.2 305 63.6
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 1.5e-109 400.2 305 63.6
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 1.9e-109 399.8 309 64.1
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 3.3e-109 399.1 302 62.9
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 5.6e-109 398.3 295 64.4
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 8.0e-108 394.4 300 62.7
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 8.0e-108 394.4 290 65.2
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 1.4e-107 393.7 304 62.2
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.8e-107 393.3 316 63.0
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 1.8e-107 393.3 304 61.2
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 4.0e-107 392.1 311 59.8
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 3.4e-106 389.0 308 61.0
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 5.8e-106 388.3 303 62.4
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 2.2e-105 386.3 295 60.3
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 3.7e-105 385.6 297 63.0
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 6.4e-105 384.8 312 59.6
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 1.9e-104 383.3 303 61.4
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 1.9e-104 383.3 328 58.2
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 4.1e-104 382.1 293 61.8
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 6.0e-103 378.3 315 60.3
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 3.0e-102 375.9 297 60.6
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 3.9e-102 375.6 260 69.6
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 1.2e-100 370.5 431 46.6
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 2.8e-100 369.4 306 58.2
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 6.2e-100 368.2 296 60.5
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 1.3e-97 360.5 303 58.1
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 4.9e-97 358.6 445 45.4
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 1.4e-96 357.1 299 58.5
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 2.7e-95 352.8 287 58.9
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 3.9e-94 349.0 327 54.7
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 1.5e-93 347.1 296 55.7
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 1.5e-93 347.1 292 57.2
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 5.6e-93 345.1 297 55.6
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 1.6e-92 343.6 299 55.9
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 2.1e-92 343.2 292 56.5
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 4.7e-92 342.0 300 56.0
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 5.2e-91 338.6 305 53.1
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.5e-85 319.7 308 51.6
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 9.0e-75 284.6 314 44.6
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 9.9e-74 281.2 238 59.7
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 3.5e-71 272.7 292 45.2
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 4.5e-66 255.8 308 41.9
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 2.1e-60 236.9 183 62.8
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 7.1e-56 221.9 150 67.3
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.1e-55 220.3 299 41.1
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.4e-51 207.6 265 40.4
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 9.1e-43 178.3 124 65.3
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 1.1e-35 154.8 116 62.1
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 5.9e-34 149.1 87 72.4
Cre09.g398150 Chlamydomonas reinhardtii HOM05D007134 ORTHO05D009004 2.5e-08 63.9 344 21.5
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 3.6e-07 60.1 70 47.1


User provided reference genes

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