Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 4.4e-178 627.9 318 100.0
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 5.1e-110 401.7 253 81.4
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.1e-99 367.5 319 62.4
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.4e-99 367.1 319 62.4
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 3.5e-95 352.4 319 60.5
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 1.6e-92 343.6 321 60.1
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 8.1e-92 341.3 315 59.4
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 6.0e-87 325.1 308 58.4
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 1.3e-78 297.4 323 55.4
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 6.7e-78 295.0 322 53.1
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 2.2e-73 280.0 326 52.1
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 6.5e-73 278.5 326 52.8
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 4.2e-72 275.8 319 49.2
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.6e-71 272.7 308 52.3
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 4.6e-71 272.3 325 49.5
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 1.1e-67 261.2 323 49.2
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 1.8e-67 260.4 323 49.2
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 6.9e-67 258.5 323 48.9
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 2.0e-66 256.9 327 48.3
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 2.6e-66 256.5 325 49.5
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 7.7e-66 255.0 323 48.3
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 1.9e-64 250.4 346 48.0
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 2.7e-63 246.5 329 48.0
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 1.4e-62 244.2 324 46.9
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 1.1e-61 241.1 290 46.9
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 2.0e-61 240.4 320 47.2
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 2.6e-61 240.0 342 47.1
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 4.4e-61 239.2 319 47.6
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 2.2e-60 236.9 319 46.1
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 7.0e-59 231.9 313 49.8
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 1.1e-56 224.6 320 42.2
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 2.5e-56 223.4 321 43.6
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 4.2e-56 222.6 323 44.9
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 2.7e-55 219.9 325 44.6
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 6.1e-55 218.8 322 43.5
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 2.0e-53 213.8 320 44.7
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 4.4e-53 212.6 322 42.5
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 1.3e-52 211.1 321 43.3
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 2.8e-52 209.9 280 48.2
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 7.0e-51 205.3 319 42.3
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 9.1e-51 204.9 320 40.9
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 1.2e-50 204.5 286 44.1
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 2.0e-50 203.8 322 44.4
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 1.0e-49 201.4 346 42.2
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 1.1e-48 198.0 265 44.2
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 9.4e-48 194.9 242 48.3
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 6.1e-47 192.2 327 42.8
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.5e-45 187.6 261 49.0
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 1.7e-44 184.1 339 38.9
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 1.7e-44 184.1 339 38.9
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 1.7e-44 184.1 325 39.4
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 1.8e-43 180.6 352 38.1
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 3.1e-43 179.9 332 40.7
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 3.5e-42 176.4 319 38.9
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 1.0e-41 174.9 305 41.0
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 1.3e-41 174.5 353 38.5
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 6.5e-41 172.2 332 40.4
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 1.5e-40 171.0 330 41.8
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 9.4e-40 168.3 349 37.0
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 9.4e-40 168.3 324 38.9
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 1.2e-39 167.9 309 39.8
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 1.6e-39 167.5 323 38.1
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 4.7e-39 166.0 327 38.2
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 6.1e-39 165.6 311 38.9
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 2.3e-38 163.7 356 37.4
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 3.0e-38 163.3 327 40.4
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 4.0e-38 162.9 327 40.4
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 6.8e-38 162.2 311 38.9
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 1.3e-36 157.9 324 37.3
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 2.0e-34 150.6 325 37.8
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 3.5e-34 149.8 252 39.7
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 1.3e-33 147.9 317 38.5
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 1.3e-33 147.9 331 36.3
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 1.3e-33 147.9 244 41.4
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 2.5e-32 143.7 309 35.3
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 2.8e-31 140.2 351 34.5
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 2.6e-29 133.7 317 36.3
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 9.8e-29 131.7 313 36.1
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 6.3e-28 129.0 337 33.2
Cpa.g.sc208.8 Carica papaya HOM05D007538 ORTHO05D009464 1.1e-27 128.3 251 40.6
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 4.1e-27 126.3 324 34.6
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 1.2e-26 124.8 347 32.9
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 1.6e-23 114.4 299 35.5
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 6.1e-23 112.5 328 32.9
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 3.7e-20 103.2 333 30.9
CAN.G1987.3 Capsicum annuum HOM05D007538 ORTHO05D009464 4.1e-19 99.8 202 37.6
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 4.1e-19 99.8 307 31.9
Zm00001eb251400 Zea mays HOM05D007538 ORTHO05D009464 3.0e-17 93.6 289 33.6
SEGI_18774 Sequoiadendron giganteum HOM05D007538 ORTHO05D009464 6.6e-17 92.4 326 29.4
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 8.6e-17 92.0 318 29.6
MBI04_g44375_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 1.9e-16 90.9 160 40.0
Psat0s1646g0240 Pisum sativum HOM05D007538 ORTHO05D009464 2.5e-16 90.5 158 41.1
MBI04_g32200_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 1.3e-12 78.2 86 51.2
Aqoxy1G00983 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 5.1e-09 66.2 198 31.3
THA.LOC104798612 Tarenaya hassleriana HOM05D007538 ORTHO05D009464 3.1e-06 57.0 75 46.7


User provided reference genes

Program Settings