Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1025500 Malus domestica HOM05D002388 ORTHO05D008833 1.9e-37 158.7 81 100.0
MD16G1280900 Malus domestica HOM05D002388 ORTHO05D008833 7.2e-37 156.8 81 97.5
Prupe.5G029600 Prunus persica HOM05D002388 ORTHO05D008833 1.6e-36 155.6 81 97.5
FAN18G1485 Fragaria x ananassa HOM05D002388 ORTHO05D008833 1.2e-34 149.4 81 95.1
FAN04G1000 Fragaria x ananassa HOM05D002388 ORTHO05D008833 2.0e-34 148.7 81 92.6
RcHm_v2.0_Chr7g0211611 Rosa chinensis HOM05D002388 ORTHO05D008833 2.0e-34 148.7 81 93.8
FAN08G0310 Fragaria x ananassa HOM05D002388 ORTHO05D008833 3.4e-34 147.9 81 92.6
CiPaw.11G097500 Carya illinoinensis HOM05D002388 ORTHO05D008833 4.4e-34 147.5 81 90.1
Haze_08171 Corylus avellana HOM05D002388 ORTHO05D008833 2.2e-33 145.2 81 91.4
Potri.001G138100 Populus trichocarpa HOM05D002388 ORTHO05D008833 2.8e-33 144.8 81 86.4
QL12p001301 Quercus lobata HOM05D002388 ORTHO05D008833 2.8e-33 144.8 80 87.5
TAR375G0363 Trochodendron aralioides HOM05D002388 ORTHO05D008833 3.7e-33 144.4 81 86.4
TWI60G0513 Tripterygium wilfordii HOM05D002388 ORTHO05D008833 1.4e-32 142.5 81 85.2
TWI81G0136 Tripterygium wilfordii HOM05D002388 ORTHO05D008833 1.4e-32 142.5 81 84.0
Ciclev10003014m.g Citrus clementina HOM05D002388 ORTHO05D008833 1.8e-32 142.1 81 87.7
DCAR_004281 Daucus carota HOM05D002388 ORTHO05D008833 1.8e-32 142.1 81 87.7
Glyma.10G041600 Glycine max HOM05D002388 ORTHO05D008833 1.8e-32 142.1 81 87.7
THA.LOC104804589 Tarenaya hassleriana HOM05D002388 ORTHO05D008833 1.8e-32 142.1 81 90.1
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.4e-32 141.7 81 84.0
Medtr8g066600 Medicago truncatula HOM05D002388 ORTHO05D008833 3.1e-32 141.4 81 86.4
Eucgr.D02219 Eucalyptus grandis HOM05D002388 ORTHO05D008833 4.1e-32 141.0 81 85.2
CiPaw.12G067300 Carya illinoinensis HOM05D002388 ORTHO05D008833 5.4e-32 140.6 81 85.2
Dinv28991 Davidia involucrata HOM05D002388 ORTHO05D008833 5.4e-32 140.6 81 87.7
PGR031G2620 Punica granatum HOM05D002388 ORTHO05D008833 5.4e-32 140.6 79 88.6
TPR.G3364 Trifolium pratense HOM05D002388 ORTHO05D008833 7.0e-32 140.2 81 88.9
Glyma.13G128600 Glycine max HOM05D002388 ORTHO05D008833 9.2e-32 139.8 81 86.4
arahy.Tifrunner.gnm1.ann1.Y11EX9 Arachis hypogaea HOM05D002388 ORTHO05D008833 1.6e-31 139.0 81 84.0
Lj1g0006191 Lotus japonicus HOM05D002388 ORTHO05D008833 1.6e-31 139.0 81 86.4
Nn3g19407 Nelumbo nucifera HOM05D002388 ORTHO05D008833 2.0e-31 138.7 81 85.2
Hma1.2p1_0870F.1_g230830 Hydrangea macrophylla HOM05D002388 ORTHO05D008833 2.7e-31 138.3 80 86.2
Thecc.03G308600 Theobroma cacao HOM05D002388 ORTHO05D008833 2.7e-31 138.3 81 85.2
Actinidia14785 Actinidia chinensis HOM05D002388 ORTHO05D008833 3.5e-31 137.9 81 85.2
TAR119G0002 Trochodendron aralioides HOM05D002388 ORTHO05D008833 3.5e-31 137.9 81 85.2
Duzib205G0142 Durio zibethinus HOM05D002388 ORTHO05D008833 4.5e-31 137.5 81 87.7
Medtr2g014320 Medicago truncatula HOM05D002388 ORTHO05D008833 4.5e-31 137.5 78 85.9
Duzib068G0043 Durio zibethinus HOM05D002388 ORTHO05D008833 5.9e-31 137.1 81 86.4
Psat4g122960 Pisum sativum HOM05D002388 ORTHO05D008833 5.9e-31 137.1 81 85.2
PSO384G4479 Papaver somniferum HOM05D002388 ORTHO05D008833 7.8e-31 136.7 81 86.4
CSS0026703 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 1.0e-30 136.3 81 84.0
CSS0033524 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 1.0e-30 136.3 81 84.0
Cc08_g03400 Coffea canephora HOM05D002388 ORTHO05D008833 1.0e-30 136.3 81 82.7
GSVIVG01013070001 Vitis vinifera HOM05D002388 ORTHO05D008833 1.0e-30 136.3 78 83.3
Gohir.D08G175050 Gossypium hirsutum HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 86.4
Gorai.004G182800 Gossypium raimondii HOM05D002388 ORTHO05D008833 1.3e-30 136.0 81 86.4
Manes.04G058600 Manihot esculenta HOM05D002388 ORTHO05D008833 2.3e-30 135.2 79 84.8
PSO339G0280 Papaver somniferum HOM05D002388 ORTHO05D008833 2.3e-30 135.2 81 85.2
Sed0013912 Sechium edule HOM05D002388 ORTHO05D008833 3.8e-30 134.4 81 85.2
CsaV3_3G001440 Cucumis sativus L. HOM05D002388 ORTHO05D008833 5.0e-30 134.0 81 85.2
SalBow6G3465 Salvia bowleyana HOM05D002388 ORTHO05D008833 5.0e-30 134.0 81 81.5
vmacro14193 Vaccinium macrocarpon HOM05D002388 ORTHO05D008833 5.0e-30 134.0 81 81.5
MELO3C013830.2 Cucumis melo HOM05D002388 ORTHO05D008833 6.6e-30 133.7 81 84.0
CANSAT21G0073 Cannabis sativa HOM05D002388 ORTHO05D008833 8.6e-30 133.3 81 86.4
COL.COLO4_16958 Corchorus olitorius HOM05D002388 ORTHO05D008833 1.1e-29 132.9 81 85.2
EL10Ac5g12027 Beta vulgaris HOM05D002388 ORTHO05D008833 1.5e-29 132.5 81 81.5
Cpa.g.sc13.304 Carica papaya HOM05D002388 ORTHO05D008833 1.5e-29 132.5 81 84.0
Migut.A01083 Erythranthe guttata HOM05D002388 ORTHO05D008833 3.3e-29 131.3 81 77.8
HanXRQChr17g0538091 Helianthus annuus HOM05D002388 ORTHO05D008833 3.3e-29 131.3 81 76.5
SGA_v2.0_scaffold20G09240 Striga asiatica HOM05D002388 ORTHO05D008833 3.3e-29 131.3 80 78.8
AUR62018655 Chenopodium quinoa HOM05D002388 ORTHO05D008833 4.3e-29 131.0 81 82.7
Peaxi162Scf00185g00821 Petunia axillaris HOM05D002388 ORTHO05D008833 4.3e-29 131.0 81 80.2
CSS0009097 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 5.6e-29 130.6 80 82.5
ECA246G0855 Erigeron canadensis HOM05D002388 ORTHO05D008833 7.3e-29 130.2 81 76.5
Ah.12g055420 Amaranthus hybridus HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 80.2
CAN.G137.4 Capsicum annuum HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 77.8
AUR62007344 Chenopodium quinoa HOM05D002388 ORTHO05D008833 9.5e-29 129.8 81 82.7
Aa31LG4G4590 Aethionema arabicum HOM05D002388 ORTHO05D008833 1.2e-28 129.4 81 81.5
A02p19260 Brassica napus HOM05D002388 ORTHO05D008833 1.2e-28 129.4 81 81.5
BolC2t09212H Brassica oleracea HOM05D002388 ORTHO05D008833 1.2e-28 129.4 81 81.5
BraA07t31559Z Brassica rapa HOM05D002388 ORTHO05D008833 1.2e-28 129.4 81 81.5
Carub.0002s2112 Capsella rubella HOM05D002388 ORTHO05D008833 1.2e-28 129.4 81 81.5
Thhalv10019650m.g Eutrema salsugineum HOM05D002388 ORTHO05D008833 1.2e-28 129.4 81 81.5
BraA02t06971Z Brassica rapa HOM05D002388 ORTHO05D008833 1.6e-28 129.0 81 81.5
AL2G34200 Arabidopsis lyrata HOM05D003614 ORTHO05D004156 2.1e-28 128.6 81 80.2
AT1G74340 Arabidopsis thaliana HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 80.2
CARHR067600 Cardamine hirsuta HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 81.5
Phvul.003G283500 Phaseolus vulgaris HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 77.8
unitig_32.g10897 Utricularia gibba HOM05D002388 ORTHO05D008833 2.1e-28 128.6 81 79.0
CSS0006499 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 2.8e-28 128.3 80 81.2
Nitab4.5_0000556g0150 Nicotiana tabacum HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 76.5
Sp5g29500 Schrenkiella parvula HOM05D002388 ORTHO05D008833 2.8e-28 128.3 81 80.2
BcaC08g46864 Brassica carinata HOM05D002388 ORTHO05D008833 3.6e-28 127.9 81 81.5
BolC6t39879H Brassica oleracea HOM05D002388 ORTHO05D008833 3.6e-28 127.9 81 81.5
CAN.G474.16 Capsicum annuum HOM05D002388 ORTHO05D008833 3.6e-28 127.9 81 77.8
Nitab4.5_0002778g0070 Nicotiana tabacum HOM05D002388 ORTHO05D008833 3.6e-28 127.9 80 77.5
Lalb_Chr05g0225791 Lupinus albus HOM05D002388 ORTHO05D008833 4.7e-28 127.5 81 81.5
Peaxi162Scf00045g00216 Petunia axillaris HOM05D002388 ORTHO05D008833 8.0e-28 126.7 81 75.3
Nitab4.5_0001632g0030 Nicotiana tabacum HOM05D002388 ORTHO05D008833 1.8e-27 125.6 81 76.5
Solyc08g005210.3 Solanum lycopersicum HOM05D002388 ORTHO05D008833 1.8e-27 125.6 81 75.3
Sopen08g001240 Solanum pennellii HOM05D002388 ORTHO05D008833 1.8e-27 125.6 81 75.3
CDE05G0657 Ceratophyllum demersum HOM05D002388 ORTHO05D008833 2.3e-27 125.2 80 76.2
Nitab4.5_0000109g0080 Nicotiana tabacum HOM05D002388 ORTHO05D008833 2.3e-27 125.2 81 76.5
Sopen06g021590 Solanum pennellii HOM05D002388 ORTHO05D008833 3.0e-27 124.8 81 75.3
Lsat_1_v5_gn_3_19620 Lactuca sativa HOM05D002388 ORTHO05D008833 5.2e-27 124.0 83 72.3
Os11g0311550 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D008833 6.8e-27 123.6 79 75.9
PGSC0003DMG400016784 Solanum tuberosum HOM05D002388 ORTHO05D008833 8.9e-27 123.2 81 74.1
Solyc06g066400.3 Solanum lycopersicum HOM05D002388 ORTHO05D008833 1.2e-26 122.9 81 74.1
Peaxi162Scf00038g00010 Petunia axillaris HOM05D002388 ORTHO05D008833 1.5e-26 122.5 79 73.4
PGSC0003DMG400003487 Solanum tuberosum HOM05D002388 ORTHO05D008833 2.6e-26 121.7 81 74.1
ATR0564G363 Amborella trichopoda HOM05D002388 ORTHO05D008833 2.2e-25 118.6 81 72.8
THA.LOC104808763 Tarenaya hassleriana HOM05D002388 ORTHO05D008833 1.6e-23 112.5 76 75.0
SEGI_36022 Sequoiadendron giganteum HOM05D002388 ORTHO05D008833 3.0e-22 108.2 81 63.0
Nn1g00187 Nelumbo nucifera HOM05D002388 ORTHO05D008833 2.1e-20 102.1 57 87.7
Mapoly0067s0029 Marchantia polymorpha HOM05D002388 ORTHO05D008833 3.6e-20 101.3 80 61.2
PGSC0003DMG400043827 Solanum tuberosum HOM05D002388 ORTHO05D008833 8.9e-19 96.7 81 61.7
Pp3c22_2990 Physcomitrium patens HOM05D002388 ORTHO05D008833 2.2e-17 92.0 80 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4391 Anthoceros agrestis HOM05D003123 ORTHO05D003492 6.4e-17 90.5 76 52.6
CSS0023919 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D008833 1.1e-16 89.7 78 66.7
Hund14364 Selenicereus undatus HOM05D002388 ORTHO05D008833 7.0e-16 87.0 51 84.3
arahy.Tifrunner.gnm1.ann1.G961TR Arachis hypogaea HOM05D002388 ORTHO05D008833 9.2e-16 86.7 82 58.5
SEGI_14802 Sequoiadendron giganteum HOM05D002388 ORTHO05D008833 2.7e-15 85.1 64 64.1
ClCG10G001370 Citrullus lanatus HOM05D002388 ORTHO05D008833 7.8e-15 83.6 53 79.2
Os02g0140101 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D008833 3.9e-14 81.3 49 75.5
PGSC0003DMG400016734 Solanum tuberosum HOM05D002388 ORTHO05D008833 8.6e-14 80.1 55 70.9
BcaB05g24849 Brassica carinata HOM05D002388 ORTHO05D008833 1.9e-13 79.0 50 76.0
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 3.9e-06 54.7 39 53.8


User provided reference genes

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