Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 0.0e+00 1231.5 700 100.0
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 5.7e-239 831.2 744 66.3
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 2.5e-186 656.4 691 59.0
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 8.1e-177 624.8 660 58.8
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 9.9e-175 617.8 661 58.4
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 5.4e-173 612.1 660 57.9
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 4.3e-170 602.4 661 57.6
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 4.1e-144 516.2 650 52.0
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 3.2e-141 506.5 623 50.6
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 5.5e-141 505.8 725 46.9
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 2.3e-139 500.4 674 48.1
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 2.8e-137 493.4 637 49.1
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 1.1e-133 481.5 658 46.8
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 4.2e-133 479.6 741 43.0
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.8e-131 474.2 682 47.1
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 7.4e-130 468.8 668 46.7
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 1.7e-129 467.6 681 45.4
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 2.4e-128 463.8 675 45.5
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 7.0e-128 462.2 679 45.9
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 1.6e-127 461.1 677 44.8
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 4.5e-127 459.5 678 45.0
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.2e-126 457.2 662 45.6
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 2.1e-124 450.7 632 47.5
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 2.1e-124 450.7 648 45.5
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 3.0e-123 446.8 652 45.4
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 8.8e-123 445.3 675 43.7
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.2e-121 440.7 612 46.4
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 2.2e-121 440.7 612 46.1
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 1.7e-118 431.0 613 46.7
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 4.2e-117 426.4 655 44.9
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 3.0e-115 420.2 641 44.3
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 4.0e-115 419.9 672 42.6
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 4.4e-114 416.4 682 43.0
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 2.4e-112 410.6 677 41.4
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 5.4e-112 409.5 638 41.4
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 7.0e-112 409.1 662 43.2
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 1.6e-111 407.9 680 42.6
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 1.6e-111 407.9 680 42.6
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 7.7e-111 405.6 646 43.7
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 1.9e-109 401.0 571 45.9
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 8.0e-108 395.6 628 43.9
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 2.0e-106 391.0 666 40.4
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 7.0e-104 382.5 664 40.2
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 2.0e-103 380.9 664 39.8
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 5.9e-103 379.4 650 41.1
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 2.5e-101 374.0 622 41.0
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 3.3e-101 373.6 658 39.7
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 5.6e-101 372.9 668 38.5
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 1.2e-100 371.7 660 40.0
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 1.2e-100 371.7 660 40.0
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 1.2e-100 371.7 660 40.0
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 2.1e-100 370.9 660 39.4
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 2.1e-100 370.9 688 39.1
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 1.2e-98 365.2 665 39.2
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 7.5e-98 362.5 665 39.5
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 3.7e-97 360.1 627 39.9
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 6.4e-97 359.4 746 37.1
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 5.4e-96 356.3 865 34.8
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 7.0e-96 355.9 515 41.0
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 3.9e-94 350.1 676 38.0
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 5.6e-93 346.3 313 59.4
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 5.6e-93 346.3 672 37.2
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 9.5e-93 345.5 662 38.4
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 9.5e-93 345.5 642 39.9
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 1.2e-92 345.1 654 35.8
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 2.3e-91 340.9 576 41.1
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 3.1e-91 340.5 535 41.5
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 5.2e-91 339.7 658 35.3
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 8.9e-91 339.0 479 43.6
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 2.6e-90 337.4 631 37.6
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 5.8e-90 336.3 662 37.5
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 1.7e-89 334.7 654 37.5
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 4.9e-89 333.2 654 35.8
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 2.4e-88 330.9 626 39.0
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 5.4e-88 329.7 631 36.9
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.6e-87 328.2 669 36.3
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 2.0e-87 327.8 690 36.8
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 5.6e-85 319.7 315 56.8
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 2.8e-84 317.4 660 35.9
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 8.1e-84 315.8 680 36.6
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 5.2e-83 313.2 720 35.0
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 7.1e-80 302.8 594 36.0
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 8.9e-75 285.8 651 35.3
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 3.1e-67 260.8 579 35.6
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 6.4e-65 253.1 276 48.9
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.6e-63 248.4 266 49.6
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 3.5e-63 247.3 588 34.9
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 1.1e-59 235.7 702 31.2
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 1.6e-55 221.9 230 52.6
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 2.9e-49 201.1 417 37.9
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 2.7e-47 194.5 536 30.0
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 6.7e-46 189.9 152 67.8
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 2.2e-36 158.3 516 31.0
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 8.2e-36 156.4 706 25.6
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 2.6e-34 151.4 470 31.3
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 7.2e-32 143.3 198 48.0
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 3.6e-31 141.0 155 50.3
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 4.6e-31 140.6 133 59.4
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 5.1e-30 137.1 309 34.3
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 4.8e-28 130.6 386 32.9
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 1.8e-27 128.6 165 49.7
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 2.4e-27 128.3 329 34.7
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 4.5e-26 124.0 264 36.4
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 1.3e-25 122.5 257 38.1
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.0e-22 112.8 288 36.1
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 4.8e-20 104.0 262 31.3
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 7.2e-16 90.1 685 22.3
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 2.6e-13 81.6 90 47.8
Mapoly0016s0037 Marchantia polymorpha HOM05D006140 ORTHO05D007834 3.3e-13 81.3 371 23.7
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 2.2e-12 78.6 110 43.6
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 1.3e-09 69.3 55 63.6
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 2.9e-09 68.2 127 41.7
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 4.2e-08 64.3 342 27.5
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 6.1e-07 60.5 115 45.2
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 6.1e-07 60.5 613 21.0
CBR_g24386 Chara braunii HOM05D006140 ORTHO05D007834 8.8e-06 56.6 136 32.4


User provided reference genes

Program Settings