Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1020100 Malus domestica HOM05D004024 ORTHO05D004639 5.9e-52 207.2 102 100.0
MD11G1206200 Malus domestica HOM05D004024 ORTHO05D004639 7.2e-42 173.7 109 85.3
MD03G1189900 Malus domestica HOM05D004024 ORTHO05D004639 4.7e-41 171.0 107 86.0
MD00G1122600 Malus domestica HOM05D004024 ORTHO05D004639 1.4e-37 159.5 103 83.5
Prupe.4G231300 Prunus persica HOM05D004024 ORTHO05D004639 4.1e-37 157.9 107 81.3
FAN25G0894 Fragaria x ananassa HOM05D004024 ORTHO05D004639 4.0e-32 141.4 104 71.2
FAN11G0159 Fragaria x ananassa HOM05D004024 ORTHO05D004639 6.8e-32 140.6 102 73.5
FAN16G1414 Fragaria x ananassa HOM05D004024 ORTHO05D004639 4.4e-31 137.9 108 69.4
FAN21G2056 Fragaria x ananassa HOM05D004024 ORTHO05D004639 5.7e-31 137.5 99 73.7
RcHm_v2.0_Chr5g0042411 Rosa chinensis HOM05D004024 ORTHO05D004639 7.5e-31 137.1 99 74.7
FAN25G3281 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.8e-29 132.5 117 64.1
Cfa020239 Carpinus fangiana HOM05D004024 ORTHO05D004639 3.1e-29 131.7 102 70.6
Thecc.07G023700 Theobroma cacao HOM05D004024 ORTHO05D004639 1.0e-27 126.7 106 67.9
Haze_09776 Corylus avellana HOM05D004024 ORTHO05D004639 2.3e-27 125.6 105 69.5
Sed0002582 Sechium edule HOM05D004024 ORTHO05D004639 5.5e-26 120.9 107 62.6
CiPaw.11G199900 Carya illinoinensis HOM05D004024 ORTHO05D004639 1.2e-25 119.8 105 64.8
arahy.Tifrunner.gnm1.ann1.01HUHH Arachis hypogaea HOM05D004024 ORTHO05D004639 1.6e-25 119.4 104 67.3
Glyma.02G296700 Glycine max HOM05D004024 ORTHO05D004639 1.6e-25 119.4 103 67.0
arahy.Tifrunner.gnm1.ann1.NPZ9GD Arachis hypogaea HOM05D004024 ORTHO05D004639 2.1e-25 119.0 104 66.3
Phvul.008G274600 Phaseolus vulgaris HOM05D004024 ORTHO05D004639 2.1e-25 119.0 105 64.8
Gohir.D13G139900 Gossypium hirsutum HOM05D004024 ORTHO05D004639 2.8e-25 118.6 104 64.4
Gorai.013G156500 Gossypium raimondii HOM05D004024 ORTHO05D004639 2.8e-25 118.6 104 64.4
VMungo0647G2266 Vigna mungo HOM05D004024 ORTHO05D004639 3.6e-25 118.2 105 64.8
Gohir.A01G086400 Gossypium hirsutum HOM05D004024 ORTHO05D004639 4.7e-25 117.9 104 62.5
Gorai.002G095600 Gossypium raimondii HOM05D004024 ORTHO05D004639 4.7e-25 117.9 104 62.5
MELO3C014143.2 Cucumis melo HOM05D004024 ORTHO05D004639 8.0e-25 117.1 107 61.7
Gohir.A13G135400 Gossypium hirsutum HOM05D004024 ORTHO05D004639 8.0e-25 117.1 104 63.5
PGR083G0593 Punica granatum HOM05D004024 ORTHO05D004639 8.0e-25 117.1 97 67.0
Gohir.D01G072600 Gossypium hirsutum HOM05D004024 ORTHO05D004639 1.4e-24 116.3 104 61.5
Peaxi162Scf00285g00929 Petunia axillaris HOM05D004024 ORTHO05D004639 1.4e-24 116.3 100 64.0
Nitab4.5_0008232g0030 Nicotiana tabacum HOM05D004024 ORTHO05D004639 1.8e-24 115.9 104 63.5
CsaV3_3G004470 Cucumis sativus L. HOM05D004024 ORTHO05D004639 2.3e-24 115.5 105 61.0
Glyma.14G016900 Glycine max HOM05D004024 ORTHO05D004639 2.3e-24 115.5 103 65.0
Gorai.007G311300 Gossypium raimondii HOM05D004024 ORTHO05D004639 2.3e-24 115.5 107 62.6
LjContig00272g0016413 Lotus japonicus HOM05D004024 ORTHO05D004639 3.0e-24 115.2 103 64.1
QL08p008635 Quercus lobata HOM05D004024 ORTHO05D004639 3.0e-24 115.2 112 60.7
PGSC0003DMG401022191 Solanum tuberosum HOM05D004024 ORTHO05D004639 3.0e-24 115.2 102 62.7
COL.COLO4_09773 Corchorus olitorius HOM05D004024 ORTHO05D004639 5.2e-24 114.4 104 63.5
Eucgr.F03519 Eucalyptus grandis HOM05D004024 ORTHO05D004639 5.2e-24 114.4 103 61.2
Solyc07g065200.3 Solanum lycopersicum HOM05D004024 ORTHO05D004639 5.2e-24 114.4 102 61.8
TPR.G31724 Trifolium pratense HOM05D004024 ORTHO05D004639 5.2e-24 114.4 104 62.5
Ca_06362_v3 Cicer arietinum L. HOM05D004024 ORTHO05D004639 6.8e-24 114.0 104 63.5
CAN.G337.35 Capsicum annuum HOM05D004024 ORTHO05D004639 8.9e-24 113.6 99 64.6
Manes.15G064200 Manihot esculenta HOM05D004024 ORTHO05D004639 8.9e-24 113.6 108 61.1
Nitab4.5_0001160g0210 Nicotiana tabacum HOM05D004024 ORTHO05D004639 1.2e-23 113.2 104 62.5
Sabra16G0237800 Salix brachista HOM05D004024 ORTHO05D004639 1.5e-23 112.8 109 61.5
SalBow8G0703 Salvia bowleyana HOM05D004024 ORTHO05D004639 1.5e-23 112.8 96 65.6
TAR626G0012 Trochodendron aralioides HOM05D004024 ORTHO05D004639 2.0e-23 112.5 102 62.7
CANSAT11G0326 Cannabis sativa HOM05D004024 ORTHO05D004639 2.6e-23 112.1 105 62.9
Sopen07g033420 Solanum pennellii HOM05D004024 ORTHO05D004639 2.6e-23 112.1 102 60.8
Medtr5g094300 Medicago truncatula HOM05D004024 ORTHO05D004639 4.4e-23 111.3 103 63.1
TWI39G0215 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 4.4e-23 111.3 108 59.3
ClCG10G004660 Citrullus lanatus HOM05D004024 ORTHO05D004639 5.7e-23 110.9 89 66.3
Lalb_Chr20g0116251 Lupinus albus HOM05D004024 ORTHO05D004639 5.7e-23 110.9 105 61.9
Potri.011G088500 Populus trichocarpa HOM05D004024 ORTHO05D004639 5.7e-23 110.9 104 61.5
SalBow8G4424 Salvia bowleyana HOM05D004024 ORTHO05D004639 7.5e-23 110.5 98 65.3
Duzib268G0935 Durio zibethinus HOM05D004024 ORTHO05D004639 1.3e-22 109.8 104 60.6
MD05G1006500 Malus domestica HOM05D004024 ORTHO05D004639 1.7e-22 109.4 72 80.6
Manes.03G134000 Manihot esculenta HOM05D004024 ORTHO05D004639 1.7e-22 109.4 113 56.6
Dinv40827 Davidia involucrata HOM05D004024 ORTHO05D004639 2.2e-22 109.0 105 62.9
Lj8A175G77 Lonicera japonica HOM05D004024 ORTHO05D004639 2.2e-22 109.0 105 61.0
TWI38G2360 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 2.2e-22 109.0 110 60.0
Potri.001G360300 Populus trichocarpa HOM05D004024 ORTHO05D004639 3.7e-22 108.2 109 58.7
GSVIVG01037765001 Vitis vinifera HOM05D004024 ORTHO05D004639 3.7e-22 108.2 101 60.4
Hma1.2p1_0036F.1_g022840 Hydrangea macrophylla HOM05D004024 ORTHO05D004639 4.9e-22 107.8 101 61.4
Migut.H01776 Erythranthe guttata HOM05D004024 ORTHO05D004639 6.3e-22 107.5 96 60.4
PGR031G2461 Punica granatum HOM05D004024 ORTHO05D004639 8.3e-22 107.1 109 59.6
Aqoxy1G04026 Aquilegia oxysepala HOM05D004024 ORTHO05D004639 1.1e-21 106.7 105 59.0
Actinidia39078 Actinidia chinensis HOM05D004024 ORTHO05D004639 1.8e-21 105.9 96 63.5
Gohir.A11G277566 Gossypium hirsutum HOM05D004024 ORTHO05D004639 1.8e-21 105.9 96 63.5
Cc05_g14570 Coffea canephora HOM05D004024 ORTHO05D004639 2.4e-21 105.5 99 61.6
MSTRG.6976 Avicennia marina HOM05D004024 ORTHO05D004639 3.1e-21 105.1 98 65.3
CSS0029510 Camellia sinensis var. sinensis HOM05D004024 ORTHO05D004639 3.1e-21 105.1 98 60.2
CARHR268820 Cardamine hirsuta HOM05D004024 ORTHO05D004639 3.1e-21 105.1 104 55.8
CSS0039941 Camellia sinensis var. sinensis HOM05D004024 ORTHO05D004639 5.4e-21 104.4 96 61.5
Aa31LG3G11450 Aethionema arabicum HOM05D004024 ORTHO05D004639 9.2e-21 103.6 102 56.9
Oeu054320.1 Olea europaea HOM05D004024 ORTHO05D004639 9.2e-21 103.6 100 58.0
A01p17920 Brassica napus HOM05D004024 ORTHO05D004639 1.2e-20 103.2 104 56.7
Oeu034550.1 Olea europaea HOM05D004024 ORTHO05D004639 1.2e-20 103.2 96 61.5
arahy.Tifrunner.gnm1.ann1.M3IDM0 Arachis hypogaea HOM05D004024 ORTHO05D004639 1.6e-20 102.8 104 56.7
BraA01t01747Z Brassica rapa HOM05D004024 ORTHO05D004639 1.6e-20 102.8 105 57.1
Psat0s4319g0040 Pisum sativum HOM05D004024 ORTHO05D004639 3.5e-20 101.7 102 57.8
Actinidia35382 Actinidia chinensis HOM05D004024 ORTHO05D004639 4.5e-20 101.3 99 59.6
BcaC09g50630 Brassica carinata HOM05D004024 ORTHO05D004639 5.9e-20 100.9 104 55.8
C01p22720 Brassica napus HOM05D004024 ORTHO05D004639 5.9e-20 100.9 104 55.8
BolC1t02201H Brassica oleracea HOM05D004024 ORTHO05D004639 5.9e-20 100.9 104 55.8
Migut.M01685 Erythranthe guttata HOM05D004024 ORTHO05D004639 5.9e-20 100.9 89 62.9
AL8G31060 Arabidopsis lyrata HOM05D004024 ORTHO05D004639 7.8e-20 100.5 103 56.3
Lsat_1_v5_gn_5_3461 Lactuca sativa HOM05D004024 ORTHO05D004639 7.8e-20 100.5 100 56.0
Sp6g17400 Schrenkiella parvula HOM05D004024 ORTHO05D004639 7.8e-20 100.5 103 55.3
Sp7g24640 Schrenkiella parvula HOM05D004024 ORTHO05D004639 7.8e-20 100.5 104 55.8
MBI16_g42313_MAGBIO Magnolia biondii HOM05D004024 ORTHO05D004639 1.0e-19 100.1 105 54.3
SGA_v2.0_scaffold8G04376 Striga asiatica HOM05D004024 ORTHO05D004639 1.0e-19 100.1 96 58.3
Aa31LG5G12280 Aethionema arabicum HOM05D004024 ORTHO05D004639 1.3e-19 99.8 105 54.3
Carub.0007s1420 Capsella rubella HOM05D004024 ORTHO05D004639 1.3e-19 99.8 104 54.8
AL7G26210 Arabidopsis lyrata HOM05D004024 ORTHO05D004639 1.7e-19 99.4 104 53.8
BcaB03g12503 Brassica carinata HOM05D004024 ORTHO05D004639 1.7e-19 99.4 104 55.8
BolC3t14065H Brassica oleracea HOM05D004024 ORTHO05D004639 1.7e-19 99.4 102 55.9
THA.LOC104811646 Tarenaya hassleriana HOM05D004024 ORTHO05D004639 1.7e-19 99.4 108 55.6
Carub.0008s1586 Capsella rubella HOM05D004024 ORTHO05D004639 2.9e-19 98.6 100 55.0
HanXRQChr05g0159961 Helianthus annuus HOM05D004024 ORTHO05D004639 2.9e-19 98.6 104 52.9
CARHR234270 Cardamine hirsuta HOM05D004024 ORTHO05D004639 5.0e-19 97.8 104 52.9
AT4G26670 Arabidopsis thaliana HOM05D004024 ORTHO05D004639 8.6e-19 97.1 104 53.8
AT5G55510 Arabidopsis thaliana HOM05D004024 ORTHO05D004639 8.6e-19 97.1 102 54.9
EL10Ac4g07627 Beta vulgaris HOM05D004024 ORTHO05D004639 8.6e-19 97.1 107 53.3
BcaC01g06372 Brassica carinata HOM05D004024 ORTHO05D004639 8.6e-19 97.1 102 55.9
HanXRQChr11g0324641 Helianthus annuus HOM05D004024 ORTHO05D004639 8.6e-19 97.1 101 56.4
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 8.6e-19 97.1 105 56.2
CDE02G1960 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 1.1e-18 96.7 101 51.5
DCAR_013207 Daucus carota HOM05D001671 ORTHO05D004639 1.1e-18 96.7 98 56.1
ECA246G1790 Erigeron canadensis HOM05D004024 ORTHO05D004639 1.1e-18 96.7 102 52.0
CDE05G1543 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 1.5e-18 96.3 101 52.5
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 1.5e-18 96.3 105 54.3
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 1.5e-18 96.3 98 55.1
Atru.chr2.3628 Acer truncatum HOM05D004024 ORTHO05D004639 1.9e-18 95.9 99 57.6
CDE04G2600 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 1.9e-18 95.9 100 54.0
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 1.9e-18 95.9 108 52.8
arahy.Tifrunner.gnm1.ann1.4LJY9R Arachis hypogaea HOM05D004024 ORTHO05D004639 2.5e-18 95.5 92 60.9
C03p16450 Brassica napus HOM05D004024 ORTHO05D004639 2.5e-18 95.5 104 56.7
PSO210G2058 Papaver somniferum HOM05D004024 ORTHO05D004639 2.5e-18 95.5 109 52.3
BcaC09g52251 Brassica carinata HOM05D004024 ORTHO05D004639 4.3e-18 94.7 106 53.8
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 4.3e-18 94.7 101 55.4
A10p12590 Brassica napus HOM05D004024 ORTHO05D004639 4.3e-18 94.7 104 55.8
BcaB08g35907 Brassica carinata HOM05D004024 ORTHO05D001781 5.6e-18 94.4 102 53.9
C09p46180 Brassica napus HOM05D004024 ORTHO05D004639 5.6e-18 94.4 102 53.9
BolC9t57483H Brassica oleracea HOM05D004024 ORTHO05D004639 5.6e-18 94.4 102 53.9
BraA03t10700Z Brassica rapa HOM05D004024 ORTHO05D004639 5.6e-18 94.4 111 51.4
BraA10t43363Z Brassica rapa HOM05D004024 ORTHO05D004639 5.6e-18 94.4 102 53.9
Sc07g0002950 Simmondsia chinensis HOM05D004024 ORTHO05D004639 5.6e-18 94.4 100 53.0
Cpa.g.sc12.205 Carica papaya HOM05D004024 ORTHO05D004639 7.3e-18 94.0 104 53.8
DCAR_017098 Daucus carota HOM05D004024 ORTHO05D004639 9.5e-18 93.6 97 58.8
Rhsim04G0015500 Rhododendron simsii HOM05D001671 ORTHO05D004639 1.2e-17 93.2 89 60.7
Zm00001eb004090 Zea mays HOM05D004024 ORTHO05D004639 1.6e-17 92.8 102 52.0
SGA_v2.0_scaffold478G52230 Striga asiatica HOM05D004024 ORTHO05D004639 4.7e-17 91.3 84 60.7
unitig_85.g27339 Utricularia gibba HOM05D004024 ORTHO05D004639 4.7e-17 91.3 111 50.5
arahy.Tifrunner.gnm1.ann1.IM9LRW Arachis hypogaea HOM05D004024 ORTHO05D004639 1.0e-16 90.1 130 45.4
AUR62040672 Chenopodium quinoa HOM05D004024 ORTHO05D004639 1.0e-16 90.1 103 50.5
Ah.06g181090 Amaranthus hybridus HOM05D004024 ORTHO05D004639 1.4e-16 89.7 107 50.5
HPP92_024489 Vanilla planifolia HOM05D004024 ORTHO05D004639 1.4e-16 89.7 105 52.4
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 2.3e-16 89.0 109 47.7
HPP92_014278 Vanilla planifolia HOM05D004024 ORTHO05D004639 2.3e-16 89.0 85 58.8
Ciclev10009483m.g Citrus clementina HOM05D004024 ORTHO05D004639 4.0e-16 88.2 99 53.5
AUR62015937 Chenopodium quinoa HOM05D004024 ORTHO05D004639 8.9e-16 87.0 107 47.7
Os12g0514900 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 8.9e-16 87.0 101 48.5
Hund23145 Selenicereus undatus HOM05D004024 ORTHO05D004639 2.6e-15 85.5 106 48.1
Zm00001eb264400 Zea mays HOM05D004024 ORTHO05D004639 9.8e-15 83.6 75 58.7
Lj6g0021305 Lotus japonicus HOM05D004024 ORTHO05D004639 1.7e-14 82.8 106 45.3
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.2e-14 82.4 91 53.8
Zm00001eb410970 Zea mays HOM05D004024 ORTHO05D004639 3.7e-14 81.6 57 70.2
Actinidia05039 Actinidia chinensis HOM05D004024 ORTHO05D004639 1.6e-12 76.3 91 51.6
Os03g0194500 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 1.6e-12 76.3 58 67.2
Zm00001eb401140 Zea mays HOM05D004024 ORTHO05D004639 2.0e-12 75.9 81 53.1
VMungo1127G1392 Vigna mungo HOM05D004024 ORTHO05D004639 4.6e-12 74.7 81 58.0
Phvul.006G049300 Phaseolus vulgaris HOM05D004024 ORTHO05D004639 3.0e-11 72.0 60 58.3
Glyma.18G086800 Glycine max HOM05D004024 ORTHO05D004639 3.9e-11 71.6 60 60.0
Zm00001eb027670 Zea mays HOM05D004024 ORTHO05D004639 3.9e-11 71.6 100 42.0
Glyma.18G087600 Glycine max HOM05D004024 ORTHO05D004639 5.0e-11 71.2 87 50.6
Glyma.18G089100 Glycine max HOM05D004024 ORTHO05D004639 2.5e-10 68.9 60 58.3
SEGI_05638 Sequoiadendron giganteum HOM05D004024 ORTHO05D004639 3.3e-10 68.6 61 55.7
Glyma.08G323000 Glycine max HOM05D004024 ORTHO05D004639 9.5e-10 67.0 60 56.7
Pp3c24_12690 Physcomitrium patens HOM05D004024 ORTHO05D004639 2.8e-09 65.5 57 57.9
Pp3c23_11700 Physcomitrium patens HOM05D004024 ORTHO05D004639 4.7e-09 64.7 66 51.5
Mapoly0060s0085 Marchantia polymorpha HOM05D004024 ORTHO05D004639 1.8e-08 62.8 68 47.1
VMungo0540G1873 Vigna mungo HOM05D004024 ORTHO05D004639 2.3e-08 62.4 60 55.0
SMO115G0139 Selaginella moellendorffii HOM05D004024 ORTHO05D004639 2.0e-07 59.3 52 53.8
arahy.Tifrunner.gnm1.ann1.AMB9RJ Arachis hypogaea HOM05D004024 ORTHO05D004639 7.5e-07 57.4 103 40.8
AagrBONN_evm.TU.Sc2ySwM_344.687 Anthoceros agrestis HOM05D000165 ORTHO05D005214 1.7e-06 56.2 54 53.7
Hund01922 Selenicereus undatus HOM05D004024 ORTHO05D004639 3.7e-06 55.1 97 37.1
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 8.3e-06 53.9 66 48.5


User provided reference genes

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