Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.9e-164 582.4 293 100.0
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 9.0e-146 520.4 293 90.8
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 2.1e-134 482.6 293 82.9
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 4.5e-121 438.3 295 73.9
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 1.2e-118 430.3 281 75.8
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 4.7e-118 428.3 281 75.4
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 5.2e-117 424.9 281 74.7
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.3e-112 410.2 296 69.3
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 1.3e-104 383.6 292 66.8
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 1.7e-104 383.3 293 66.2
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 1.1e-103 380.6 300 65.3
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.5e-103 380.2 277 68.6
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 1.8e-101 373.2 289 63.0
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 3.4e-100 369.0 290 63.4
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 3.4e-100 369.0 289 63.7
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 1.7e-99 366.7 273 65.6
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.8e-99 365.2 289 62.6
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 9.1e-98 360.9 289 61.9
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 4.5e-97 358.6 269 64.3
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.8e-96 355.5 311 58.8
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 3.8e-96 355.5 311 58.8
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 1.1e-95 354.0 285 62.8
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 2.5e-95 352.8 298 61.1
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 5.5e-95 351.7 298 60.4
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 9.5e-95 350.9 269 64.7
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 6.1e-94 348.2 292 60.6
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.0e-93 347.4 286 60.8
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 1.0e-93 347.4 289 59.9
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.3e-93 346.3 286 60.5
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 3.0e-93 345.9 286 60.1
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 4.0e-93 345.5 290 60.7
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 8.9e-93 344.4 293 58.4
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.5e-92 343.6 271 63.8
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.7e-91 340.1 276 62.7
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 2.2e-91 339.7 272 63.2
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 1.1e-90 337.4 293 58.0
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.8e-90 336.7 287 58.9
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.1e-90 335.5 287 58.5
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 1.6e-89 333.6 292 58.2
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 5.9e-89 331.6 287 57.8
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 3.9e-88 328.9 276 60.9
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.5e-87 327.0 355 50.7
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 7.3e-87 324.7 252 62.7
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 1.2e-86 323.9 275 60.4
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 1.2e-86 323.9 292 56.5
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 2.1e-86 323.2 287 56.8
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 4.7e-86 322.0 218 72.9
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 2.3e-85 319.7 220 67.7
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 3.1e-85 319.3 275 57.5
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 3.1e-85 319.3 275 57.5
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 3.1e-85 319.3 280 58.2
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 2.6e-84 316.2 229 67.7
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 3.4e-84 315.8 276 58.7
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 4.4e-84 315.5 276 58.7
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 2.9e-83 312.8 283 56.5
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 1.1e-82 310.8 253 59.7
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 3.2e-82 309.3 278 58.6
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 7.0e-82 308.1 283 55.1
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.6e-81 307.0 249 61.8
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.0e-81 306.6 179 83.2
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 4.6e-81 305.4 289 54.7
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 1.0e-80 304.3 278 56.1
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 5.6e-79 298.5 287 54.7
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 2.1e-78 296.6 260 57.3
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 8.0e-78 294.7 278 55.0
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 5.2e-77 292.0 307 49.8
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 6.8e-77 291.6 294 51.0
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 6.8e-77 291.6 285 53.7
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 2.6e-76 289.7 279 53.8
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 2.2e-75 286.6 291 50.5
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 2.9e-75 286.2 294 50.7
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 3.7e-75 285.8 299 49.5
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 3.7e-75 285.8 295 50.2
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 8.3e-75 284.6 300 50.0
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.9e-74 283.5 292 51.0
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 4.1e-74 282.3 307 48.9
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 5.4e-74 282.0 289 49.8
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 5.4e-74 282.0 300 48.3
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 5.4e-74 282.0 293 53.2
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 2.1e-73 280.0 299 49.2
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 2.1e-73 280.0 297 51.5
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.1e-73 280.0 243 57.6
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 4.6e-73 278.9 298 49.3
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 3.0e-72 276.2 206 69.4
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 8.6e-72 274.6 312 47.1
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.5e-71 273.9 302 48.3
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.5e-71 273.9 302 48.3
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 1.5e-71 273.9 299 49.2
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 2.5e-71 273.1 301 47.8
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 2.5e-71 273.1 301 47.8
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 2.8e-70 269.6 291 49.8
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 8.1e-70 268.1 197 67.5
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 8.9e-69 264.6 269 50.9
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 2.2e-67 260.0 196 67.3
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 1.1e-66 257.7 293 48.5
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 3.2e-66 256.1 245 52.2
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 5.4e-66 255.4 373 40.5
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 9.2e-66 254.6 217 57.6
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 1.6e-65 253.8 224 58.5
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.7e-65 253.1 216 59.3
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 3.0e-64 249.6 313 45.0
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 2.5e-63 246.5 269 49.4
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 5.6e-63 245.4 227 53.7
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 3.6e-62 242.7 178 66.9
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 1.8e-61 240.4 275 45.5
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 4.0e-61 239.2 265 48.3
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 5.2e-61 238.8 283 47.7
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 2.3e-56 223.4 272 45.6
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 3.0e-56 223.0 178 61.2
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 9.0e-53 211.5 294 42.2
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 1.4e-50 204.1 289 41.9
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 5.4e-50 202.2 174 56.9
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 1.3e-48 197.6 177 54.8
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 3.9e-48 196.1 222 46.8
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 4.9e-43 179.1 236 44.1
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 8.4e-43 178.3 178 50.0
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 3.4e-36 156.4 192 45.3
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 4.5e-36 156.0 140 57.1
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 1.5e-31 141.0 82 74.4
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 7.9e-25 118.6 229 33.2
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 2.8e-22 110.2 157 47.8
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 8.2e-22 108.6 111 51.4
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 3.4e-20 103.2 234 30.3
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 8.8e-16 88.6 109 40.4
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 7.7e-12 75.5 182 28.6
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 1.7e-11 74.3 40 75.0
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 2.9e-11 73.6 44 72.7
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 5.0e-11 72.8 50 62.0
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 2.1e-09 67.4 153 29.4
FAN04G1739 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.5e-07 61.2 51 68.6
Haze_17138 Corylus avellana HOM05D000064 ORTHO05D007242 3.3e-07 60.1 81 49.4


User provided reference genes

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