Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 7.1e-198 693.7 350 100.0
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 5.4e-129 464.9 355 68.7
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.7e-122 443.4 337 69.1
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.1e-121 440.7 337 68.8
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.1e-118 430.6 337 67.4
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 4.7e-117 425.2 352 64.8
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 8.9e-116 421.0 291 78.0
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 2.0e-107 393.3 349 61.0
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 3.4e-107 392.5 360 61.4
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 4.4e-107 392.1 290 70.0
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 4.9e-106 388.7 254 75.2
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 3.2e-105 386.0 357 59.9
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 7.1e-105 384.8 360 58.9
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 1.2e-104 384.0 360 58.9
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 2.1e-104 383.3 338 60.7
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 1.0e-103 380.9 361 59.8
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 3.0e-103 379.4 392 53.8
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 4.3e-102 375.6 356 59.0
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 2.1e-101 373.2 348 59.8
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 2.8e-101 372.9 356 57.6
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 8.1e-101 371.3 356 57.6
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 1.4e-100 370.5 360 57.8
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 3.1e-100 369.4 269 69.9
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 4.0e-100 369.0 361 57.9
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 4.0e-100 369.0 377 54.9
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 5.2e-100 368.6 256 71.9
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 8.9e-100 367.9 359 57.9
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 1.3e-98 364.0 354 58.2
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 6.4e-98 361.7 269 67.3
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 1.6e-96 357.1 338 59.8
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 3.5e-96 355.9 364 59.1
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 3.0e-95 352.8 360 55.0
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 6.6e-95 351.7 352 57.4
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.1e-94 350.9 311 60.8
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 1.5e-94 350.5 360 55.0
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 7.3e-94 348.2 356 55.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 6.2e-93 345.1 356 54.2
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 4.0e-92 342.4 304 60.9
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 3.4e-91 339.3 357 55.5
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 1.7e-90 337.0 354 54.0
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 1.4e-89 334.0 354 53.7
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 1.2e-88 330.9 365 53.2
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 2.1e-88 330.1 341 54.5
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 2.7e-88 329.7 241 66.4
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 4.6e-88 328.9 287 59.9
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 6.0e-88 328.6 341 54.3
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 6.0e-88 328.6 319 55.8
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 2.3e-87 326.6 342 55.3
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 2.3e-87 326.6 297 59.6
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 3.9e-87 325.9 306 58.8
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 3.9e-87 325.9 348 51.1
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 5.1e-87 325.5 274 62.8
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 6.6e-87 325.1 338 55.3
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 1.9e-86 323.6 264 62.5
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 2.5e-86 323.2 290 60.3
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 4.3e-86 322.4 270 62.6
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 9.6e-86 321.2 311 56.3
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 2.8e-85 319.7 316 56.3
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 3.6e-85 319.3 296 58.4
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 4.8e-85 318.9 296 58.1
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 1.8e-84 317.0 340 53.2
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 2.4e-84 316.6 219 74.4
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 2.4e-84 316.6 332 53.9
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 3.1e-84 316.2 360 52.5
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 5.3e-84 315.5 375 49.1
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 6.9e-84 315.1 280 60.0
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 1.5e-83 313.9 361 52.1
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 2.0e-83 313.5 261 63.2
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 3.4e-83 312.8 286 58.4
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 5.8e-83 312.0 353 52.7
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 7.6e-83 311.6 359 51.5
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 4.9e-82 308.9 366 50.3
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 6.4e-82 308.5 271 61.6
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 8.4e-82 308.1 282 57.8
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 1.4e-81 307.4 279 59.1
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 1.4e-81 307.4 376 48.7
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 2.4e-81 306.6 360 50.6
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 3.2e-81 306.2 342 52.6
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 2.1e-80 303.5 259 60.2
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 3.5e-80 302.8 349 49.6
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 1.0e-79 301.2 260 61.5
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 1.3e-79 300.8 320 51.6
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 1.8e-79 300.4 376 48.1
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 1.8e-79 300.4 376 48.1
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 2.3e-79 300.1 286 55.9
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 3.0e-79 299.7 256 59.8
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 3.9e-79 299.3 349 49.0
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 3.9e-79 299.3 345 50.4
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 5.1e-79 298.9 290 57.6
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 6.7e-79 298.5 263 58.9
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 8.7e-79 298.1 181 77.3
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 2.5e-78 296.6 377 48.0
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 3.3e-78 296.2 235 63.8
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 3.3e-78 296.2 412 46.1
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 2.8e-77 293.1 246 61.0
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 1.8e-76 290.4 270 55.9
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 3.1e-76 289.7 241 64.3
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 3.1e-76 289.7 350 49.4
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 6.9e-76 288.5 196 71.4
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 6.9e-76 288.5 212 66.5
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 6.4e-74 282.0 280 56.1
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 3.2e-73 279.6 241 59.3
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 3.9e-71 272.7 251 57.0
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 1.3e-69 267.7 191 69.6
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 2.0e-67 260.4 261 52.9
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 1.4e-65 254.2 212 58.5
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 1.9e-65 253.8 216 56.9
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 7.1e-65 251.9 219 63.5
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 2.3e-63 246.9 152 78.9
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 2.3e-63 246.9 288 46.5
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 3.3e-62 243.0 172 64.5
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 7.4e-54 215.3 201 54.2
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 2.2e-53 213.8 121 82.6
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 5.9e-51 205.7 234 47.0
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 1.7e-50 204.1 255 45.1
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 1.0e-47 194.9 220 48.2
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 4.4e-46 189.5 98 86.7
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 1.7e-45 187.6 232 44.4
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 2.7e-32 143.7 79 81.0
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 8.8e-31 138.7 69 88.4
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 1.2e-19 101.7 64 76.6
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 2.0e-14 84.3 58 67.2
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 6.1e-08 62.8 43 67.4
Cpa.g.c30633.1 Carica papaya HOM05D005712 ORTHO05D120172 1.8e-07 61.2 56 58.9
HPP92_022533 Vanilla planifolia HOM05D004721 ORTHO05D005765 4.4e-06 56.6 119 33.6


User provided reference genes

Program Settings