Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1001900 Malus domestica HOM05D004939 ORTHO05D005843 2.3e-57 225.3 110 100.0
Prupe.5G002900 Prunus persica HOM05D004939 ORTHO05D005843 4.9e-44 181.0 108 84.3
RcHm_v2.0_Chr7g0217371 Rosa chinensis HOM05D004939 ORTHO05D005843 4.0e-38 161.4 108 74.1
FAN04G1628 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.2e-37 159.8 110 71.8
FvH4_5g26460 Fragaria vesca HOM05D004939 ORTHO05D005843 3.4e-37 158.3 110 72.7
FAN13G2929 Fragaria x ananassa HOM05D004939 ORTHO05D005843 3.4e-37 158.3 110 72.7
FAN18G1404 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.7e-36 156.0 110 71.8
QL02p016036 Quercus lobata HOM05D004939 ORTHO05D005843 2.9e-36 155.2 107 75.7
FAN08G1940 Fragaria x ananassa HOM05D004939 ORTHO05D005843 3.7e-36 154.8 110 70.0
CiPaw.07G131300 Carya illinoinensis HOM05D004939 ORTHO05D005843 4.6e-34 147.9 108 70.4
Lalb_Chr10g0095291 Lupinus albus HOM05D004939 ORTHO05D005843 3.9e-33 144.8 105 72.4
Cfa014153 Carpinus fangiana HOM05D004939 ORTHO05D005843 1.5e-32 142.9 108 67.6
Hma1.2p1_0914F.1_g236160 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 3.3e-32 141.7 109 65.1
Eucgr.F03614 Eucalyptus grandis HOM05D004939 ORTHO05D005843 4.3e-32 141.4 108 68.5
Duzib128G1725 Durio zibethinus HOM05D004939 ORTHO05D005843 2.1e-31 139.0 109 67.0
arahy.Tifrunner.gnm1.ann1.6I9FYE Arachis hypogaea HOM05D004939 ORTHO05D005843 2.8e-31 138.7 109 64.2
arahy.Tifrunner.gnm1.ann1.V9NZM2 Arachis hypogaea HOM05D004939 ORTHO05D005843 2.8e-31 138.7 109 64.2
Rhsim06G0001700 Rhododendron simsii HOM05D004939 ORTHO05D005843 3.6e-31 138.3 110 66.4
Lalb_Chr17g0338141 Lupinus albus HOM05D004939 ORTHO05D005843 4.7e-31 137.9 104 62.5
Thecc.10G149200 Theobroma cacao HOM05D004939 ORTHO05D005843 8.1e-31 137.1 109 66.1
Glyma.07G159700 Glycine max HOM05D004939 ORTHO05D005843 1.1e-30 136.7 109 66.1
Haze_22877 Corylus avellana HOM05D004939 ORTHO05D005843 1.4e-30 136.3 108 65.7
Gohir.D05G283800 Gossypium hirsutum HOM05D004939 ORTHO05D005843 1.4e-30 136.3 109 66.1
Sed0003879 Sechium edule HOM05D004939 ORTHO05D005843 1.4e-30 136.3 104 65.4
PGSC0003DMG400010009 Solanum tuberosum HOM05D004939 ORTHO05D005843 1.4e-30 136.3 110 58.2
Gohir.A05G282600 Gossypium hirsutum HOM05D004939 ORTHO05D005843 2.3e-30 135.6 109 66.1
Gohir.D05G283802 Gossypium hirsutum HOM05D004939 ORTHO05D005843 2.3e-30 135.6 109 66.1
Gorai.009G298300 Gossypium raimondii HOM05D004939 ORTHO05D005843 2.3e-30 135.6 109 66.1
Ca_12499_v3 Cicer arietinum L. HOM05D004939 ORTHO05D005843 4.0e-30 134.8 104 66.3
Peaxi162Scf00385g00719 Petunia axillaris HOM05D004939 ORTHO05D005843 4.0e-30 134.8 111 60.4
Sopen04g036540 Solanum pennellii HOM05D004939 ORTHO05D005843 4.0e-30 134.8 111 58.6
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 4.0e-30 134.8 110 63.6
Nn5g31070 Nelumbo nucifera HOM05D004939 ORTHO05D005843 6.8e-30 134.0 110 63.6
Nitab4.5_0000464g0110 Nicotiana tabacum HOM05D004939 ORTHO05D005843 6.8e-30 134.0 110 59.1
Solyc04g082900.4 Solanum lycopersicum HOM05D004939 ORTHO05D005843 6.8e-30 134.0 111 58.6
Manes.05G129700 Manihot esculenta HOM05D004939 ORTHO05D005843 8.9e-30 133.7 109 65.1
CSS0014437 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 1.5e-29 132.9 110 67.3
Potri.005G258300 Populus trichocarpa HOM05D004939 ORTHO05D005843 1.5e-29 132.9 108 64.8
SalBow6G2808 Salvia bowleyana HOM05D004939 ORTHO05D005843 1.5e-29 132.9 110 61.8
ECA238G2856 Erigeron canadensis HOM05D004939 ORTHO05D005843 2.0e-29 132.5 100 66.0
Glyma.20G006600 Glycine max HOM05D004939 ORTHO05D005843 2.0e-29 132.5 104 63.5
Oeu035772.5 Olea europaea HOM05D004939 ORTHO05D005843 2.0e-29 132.5 110 62.7
TPR.G22378 Trifolium pratense HOM05D004939 ORTHO05D005843 2.6e-29 132.1 104 65.4
Psat6g131960 Pisum sativum HOM05D004939 ORTHO05D005843 4.4e-29 131.3 105 61.0
Actinidia37902 Actinidia chinensis HOM05D004939 ORTHO05D005843 5.8e-29 131.0 110 62.7
Aqoxy6G03042 Aquilegia oxysepala HOM05D004939 ORTHO05D005843 5.8e-29 131.0 112 61.6
CsaV3_4G037720 Cucumis sativus L. HOM05D004939 ORTHO05D005843 9.9e-29 130.2 105 63.8
Lj2g0017318 Lotus japonicus HOM05D004939 ORTHO05D005843 1.7e-28 129.4 102 62.7
Potri.002G002900 Populus trichocarpa HOM05D004939 ORTHO05D005843 1.7e-28 129.4 107 62.6
Migut.N02996 Erythranthe guttata HOM05D004939 ORTHO05D005843 2.9e-28 128.6 110 61.8
Sabra02G0001700 Salix brachista HOM05D004939 ORTHO05D005843 2.9e-28 128.6 106 62.3
TWI56G0687 Tripterygium wilfordii HOM05D004939 ORTHO05D005843 3.7e-28 128.3 108 62.0
ClCG11G019130 Citrullus lanatus HOM05D004939 ORTHO05D005843 4.9e-28 127.9 105 62.9
SGA_v2.0_scaffold220G42609 Striga asiatica HOM05D004939 ORTHO05D005843 6.4e-28 127.5 108 61.1
CAN.G1330.25 Capsicum annuum HOM05D004939 ORTHO05D005843 4.1e-27 124.8 110 57.3
MELO3C017066.2 Cucumis melo HOM05D004939 ORTHO05D005843 7.1e-27 124.0 105 62.9
SGA_v2.0_scaffold227G43179 Striga asiatica HOM05D004939 ORTHO05D005843 7.1e-27 124.0 110 58.2
Sabra05G0200000 Salix brachista HOM05D004939 ORTHO05D005843 1.2e-26 123.2 108 59.3
CSS0031643 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 1.6e-26 122.9 110 63.6
Cc10_g00160 Coffea canephora HOM05D004939 ORTHO05D005843 2.7e-26 122.1 108 59.3
Phvul.003G009000 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 2.7e-26 122.1 104 60.6
Ciclev10001515m.g Citrus clementina HOM05D004939 ORTHO05D005843 3.5e-26 121.7 108 59.3
Medtr1g035090 Medicago truncatula HOM05D004939 ORTHO05D005843 4.6e-26 121.3 104 61.5
MSTRG.22074 Avicennia marina HOM05D004939 ORTHO05D005843 7.8e-26 120.6 110 59.1
DCAR_023017 Daucus carota HOM05D004939 ORTHO05D005843 3.0e-25 118.6 110 56.4
GSVIVG01013446001 Vitis vinifera HOM05D004939 ORTHO05D005843 3.0e-25 118.6 106 63.2
Atru.chr13.32 Acer truncatum HOM05D004939 ORTHO05D005843 5.1e-25 117.9 109 55.0
VMungo1215G1457 Vigna mungo HOM05D004939 ORTHO05D005843 8.6e-25 117.1 104 56.7
PGR031G2869 Punica granatum HOM05D004939 ORTHO05D005843 1.9e-24 115.9 108 57.4
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 2.5e-24 115.5 106 56.6
Lsat_1_v5_gn_2_3201 Lactuca sativa HOM05D004939 ORTHO05D005843 1.6e-23 112.8 105 55.2
THA.LOC104805020 Tarenaya hassleriana HOM05D004939 ORTHO05D005843 6.2e-23 110.9 109 52.3
HanXRQChr14g0427951 Helianthus annuus HOM05D004939 ORTHO05D005843 8.9e-22 107.1 102 59.8
Aa31LG9G13490 Aethionema arabicum HOM05D004939 ORTHO05D005843 1.2e-21 106.7 109 51.4
PSO170G6093 Papaver somniferum HOM05D004939 ORTHO05D005843 2.0e-21 105.9 100 59.0
CANSAT11G2529 Cannabis sativa HOM05D004939 ORTHO05D005843 3.4e-21 105.1 114 53.5
PSO017G2996 Papaver somniferum HOM05D004939 ORTHO05D005843 3.4e-21 105.1 100 59.0
ATR0605G152 Amborella trichopoda HOM05D004939 ORTHO05D005843 5.8e-21 104.4 110 50.0
BcaB06g28697 Brassica carinata HOM05D004939 ORTHO05D005843 7.6e-21 104.0 114 53.5
Hund05067 Selenicereus undatus HOM05D004939 ORTHO05D005843 7.6e-21 104.0 107 54.2
Os02g0193600 Oryza sativa ssp. japonica HOM05D004939 ORTHO05D005843 1.3e-20 103.2 105 50.5
C04p15520 Brassica napus HOM05D004939 ORTHO05D005843 1.7e-20 102.8 112 52.7
BolC4t23123H Brassica oleracea HOM05D004939 ORTHO05D005843 1.7e-20 102.8 112 52.7
BcaC02g11440 Brassica carinata HOM05D004939 ORTHO05D005843 2.2e-20 102.4 112 52.7
Sp4g15900 Schrenkiella parvula HOM05D004939 ORTHO05D005843 2.9e-20 102.1 110 53.6
AUR62035188 Chenopodium quinoa HOM05D004939 ORTHO05D005843 8.4e-20 100.5 108 50.9
Zm00001eb236510 Zea mays HOM05D004939 ORTHO05D005843 1.1e-19 100.1 106 48.1
Thhalv10016779m.g Eutrema salsugineum HOM05D004939 ORTHO05D005843 1.4e-19 99.8 111 52.3
Dinv23346 Davidia involucrata HOM05D004939 ORTHO05D005843 9.2e-19 97.1 62 75.8
EL10Ac1g01845 Beta vulgaris HOM05D004939 ORTHO05D005843 7.8e-18 94.0 110 46.4
Carub.0004s1519 Capsella rubella HOM05D004939 ORTHO05D005843 7.8e-18 94.0 112 48.2
AL4G29230 Arabidopsis lyrata HOM05D004939 ORTHO05D005843 1.0e-17 93.6 111 49.5
Lj4A813T64 Lonicera japonica HOM05D004939 ORTHO05D005843 3.9e-17 91.7 61 70.5
AT2G33560 Arabidopsis thaliana HOM05D004939 ORTHO05D005843 1.1e-16 90.1 111 46.8
C01p41420 Brassica napus HOM05D004939 ORTHO05D005843 1.5e-16 89.7 112 47.3
BcaC09g49204 Brassica carinata HOM05D004939 ORTHO05D005843 1.9e-16 89.4 112 47.3
BolC1t04101H Brassica oleracea HOM05D004939 ORTHO05D005843 1.9e-16 89.4 112 47.3
BraA05t20140Z Brassica rapa HOM05D004939 ORTHO05D005843 2.5e-16 89.0 113 46.0
BcaB02g10574 Brassica carinata HOM05D004939 ORTHO05D005843 3.3e-16 88.6 113 46.0
CARHR127580 Cardamine hirsuta HOM05D004939 ORTHO05D005843 2.1e-15 85.9 114 45.6
A05p11970 Brassica napus HOM05D004939 ORTHO05D005843 1.1e-14 83.6 119 42.9
HPP92_020523 Vanilla planifolia HOM05D004939 ORTHO05D005843 1.8e-14 82.8 99 45.5
BcaB05g22459 Brassica carinata HOM05D004939 ORTHO05D005843 2.4e-14 82.4 111 46.8
BcaC08g45668 Brassica carinata HOM05D004939 ORTHO05D005843 7.6e-13 77.4 108 48.1
SEGI_18344 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 1.3e-12 76.6 107 43.9
Sc02g0009340 Simmondsia chinensis HOM05D004939 ORTHO05D005843 1.4e-11 73.2 63 58.7
SMO361G0676 Selaginella moellendorffii HOM05D004939 ORTHO05D005843 9.3e-11 70.5 94 39.4
BraA02t08500Z Brassica rapa HOM05D004939 ORTHO05D005843 2.7e-10 68.9 96 43.8
SMO361G0195 Selaginella moellendorffii HOM05D004939 ORTHO05D005843 2.7e-10 68.9 94 40.4
C06p34250 Brassica napus HOM05D004939 ORTHO05D005843 3.0e-09 65.5 110 40.0
Pp3c24_5040 Physcomitrium patens HOM05D004939 ORTHO05D005843 6.6e-09 64.3 103 40.8
Psat0ss2830g0360 Pisum sativum HOM05D004939 ORTHO05D005843 7.3e-08 60.8 43 60.5
BraA02t04781Z Brassica rapa HOM05D004939 ORTHO05D005843 9.6e-08 60.5 106 35.8
TAR625G0897 Trochodendron aralioides HOM05D004939 ORTHO05D005843 9.6e-08 60.5 57 57.9
BolC6t38544H Brassica oleracea HOM05D004939 ORTHO05D005843 1.3e-07 60.1 106 37.7
Actinidia33600 Actinidia chinensis HOM05D004939 ORTHO05D005843 4.8e-07 58.2 48 66.7
Hma1.2p1_0076F.1_g039530 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 1.1e-06 57.0 36 75.0
Os04g0454900 Oryza sativa ssp. japonica HOM05D000449 ORTHO05D005843 5.3e-06 54.7 72 45.8


User provided reference genes

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