Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1001800 Malus domestica HOM05D002371 ORTHO05D002397 1.4e-61 239.6 137 100.0
Prupe.5G002800 Prunus persica HOM05D002371 ORTHO05D002397 2.5e-29 132.5 140 58.6
Cc10_g00150 Coffea canephora HOM05D002371 ORTHO05D002397 9.7e-26 120.6 136 53.7
CiPaw.07G131200 Carya illinoinensis HOM05D002371 ORTHO05D002397 1.4e-24 116.7 115 57.4
TWI56G0517 Tripterygium wilfordii HOM05D002371 ORTHO05D002397 1.4e-24 116.7 96 68.8
Duzib114G0087 Durio zibethinus HOM05D002371 ORTHO05D002397 7.0e-24 114.4 102 63.7
Manes.05G129800 Manihot esculenta HOM05D002371 ORTHO05D002397 9.1e-24 114.0 122 55.7
Nn5g31071 Nelumbo nucifera HOM05D002371 ORTHO05D002397 9.1e-24 114.0 97 64.9
RcHm_v2.0_Chr7g0217381 Rosa chinensis HOM05D002371 ORTHO05D002397 9.1e-24 114.0 143 55.2
FvH4_5g26470 Fragaria vesca HOM05D002371 ORTHO05D002397 1.2e-23 113.6 120 61.7
FAN08G1439 Fragaria x ananassa HOM05D002371 ORTHO05D002397 2.0e-23 112.8 100 68.0
FAN13G1670 Fragaria x ananassa HOM05D002371 ORTHO05D002397 2.0e-23 112.8 120 60.8
COL.COLO4_20703 Corchorus olitorius HOM05D002371 ORTHO05D002397 2.6e-23 112.5 105 63.8
Haze_22878 Corylus avellana HOM05D002371 ORTHO05D002397 3.5e-23 112.1 97 63.9
Thecc.10G149300 Theobroma cacao HOM05D002371 ORTHO05D002397 3.5e-23 112.1 101 62.4
Cfa014156 Carpinus fangiana HOM05D002371 ORTHO05D002397 7.7e-23 110.9 98 63.3
GSVIVG01013447001 Vitis vinifera HOM05D002371 ORTHO05D002397 7.7e-23 110.9 83 71.1
TAR628G0414 Trochodendron aralioides HOM05D002371 ORTHO05D002397 1.3e-22 110.2 102 62.7
MBI04_g18017_MAGBIO Magnolia biondii HOM05D002371 ORTHO05D002397 2.2e-22 109.4 96 65.6
Dinv41635 Davidia involucrata HOM05D002371 ORTHO05D002397 2.9e-22 109.0 99 67.7
Lsat_1_v5_gn_4_95980 Lactuca sativa HOM05D002371 ORTHO05D002397 2.9e-22 109.0 104 57.7
A07p42220 Brassica napus HOM05D002371 ORTHO05D002397 8.5e-22 107.5 99 57.6
HanXRQChr09g0276321 Helianthus annuus HOM05D002371 ORTHO05D002397 8.5e-22 107.5 81 67.9
Gohir.D10G194300 Gossypium hirsutum HOM05D002371 ORTHO05D002397 1.1e-21 107.1 101 61.4
THA.LOC104813729 Tarenaya hassleriana HOM05D002371 ORTHO05D002397 1.1e-21 107.1 99 61.6
ATR0605G369 Amborella trichopoda HOM05D002371 ORTHO05D002397 1.9e-21 106.3 83 68.7
CSS0044188 Camellia sinensis var. sinensis HOM05D002371 ORTHO05D002397 1.9e-21 106.3 83 67.5
Cpa.g.sc36.109 Carica papaya HOM05D002371 ORTHO05D002397 1.9e-21 106.3 104 60.6
Gorai.011G217400 Gossypium raimondii HOM05D002371 ORTHO05D002397 1.9e-21 106.3 100 61.0
Potri.002G002700 Populus trichocarpa HOM05D002371 ORTHO05D002397 1.9e-21 106.3 83 68.7
Thhalv10019316m.g Eutrema salsugineum HOM05D002371 ORTHO05D002397 2.5e-21 105.9 95 60.0
PGR083G1225 Punica granatum HOM05D002371 ORTHO05D002397 2.5e-21 105.9 112 57.1
QL02p016043 Quercus lobata HOM05D002371 ORTHO05D002397 2.5e-21 105.9 145 46.9
Sabra02G0001800 Salix brachista HOM05D002371 ORTHO05D002397 5.5e-21 104.8 83 67.5
Atru.chr13.31 Acer truncatum HOM05D002371 ORTHO05D002397 7.2e-21 104.4 94 62.8
BraA07t31751Z Brassica rapa HOM05D002371 ORTHO05D002397 7.2e-21 104.4 99 56.6
ECA232G0578 Erigeron canadensis HOM05D002371 ORTHO05D002397 7.2e-21 104.4 83 63.9
BolC6t40105H Brassica oleracea HOM05D002371 ORTHO05D002397 9.4e-21 104.0 96 57.3
Nitab4.5_0009514g0050 Nicotiana tabacum HOM05D002371 ORTHO05D002397 9.4e-21 104.0 83 66.3
vmacro04430 Vaccinium macrocarpon HOM05D002371 ORTHO05D002397 1.6e-20 103.2 140 49.3
PSO017G5852 Papaver somniferum HOM05D002371 ORTHO05D002397 2.1e-20 102.8 86 64.0
PSO170G1655 Papaver somniferum HOM05D002371 ORTHO05D002397 2.1e-20 102.8 86 64.0
C06p50830 Brassica napus HOM05D002371 ORTHO05D002397 3.6e-20 102.1 95 57.9
Aa31LG4G6660 Aethionema arabicum HOM05D002371 ORTHO05D002397 4.7e-20 101.7 138 44.9
PSO017G1180 Papaver somniferum HOM05D002371 ORTHO05D002397 6.1e-20 101.3 86 62.8
Lsat_1_v5_gn_2_126481 Lactuca sativa HOM05D002371 ORTHO05D002397 8.0e-20 100.9 91 61.5
AL2G36700 Arabidopsis lyrata HOM05D002371 ORTHO05D002397 1.0e-19 100.5 98 57.1
Sopen04g036550 Solanum pennellii HOM05D002371 ORTHO05D002397 1.0e-19 100.5 88 62.5
PGSC0003DMG400009928 Solanum tuberosum HOM05D002371 ORTHO05D002397 1.0e-19 100.5 67 74.6
Aqoxy5G00951 Aquilegia oxysepala HOM05D002371 ORTHO05D002397 1.4e-19 100.1 107 57.0
CAN.G1330.26 Capsicum annuum HOM05D002371 ORTHO05D002397 1.4e-19 100.1 83 63.9
BcaC08g47231 Brassica carinata HOM05D002371 ORTHO05D002397 1.8e-19 99.8 95 56.8
CDE05G2421 Ceratophyllum demersum HOM05D002371 ORTHO05D002397 1.8e-19 99.8 83 66.3
ECA238G0108 Erigeron canadensis HOM05D002371 ORTHO05D002397 2.3e-19 99.4 88 58.0
DCAR_026374 Daucus carota HOM05D002371 ORTHO05D002397 4.0e-19 98.6 67 71.6
Migut.N02997 Erythranthe guttata HOM05D002371 ORTHO05D002397 5.2e-19 98.2 115 54.8
Gohir.A05G282500 Gossypium hirsutum HOM05D002371 ORTHO05D002397 6.8e-19 97.8 101 56.4
Gohir.D05G283700 Gossypium hirsutum HOM05D002371 ORTHO05D002397 6.8e-19 97.8 101 56.4
Gohir.D05G283850 Gossypium hirsutum HOM05D002371 ORTHO05D002397 6.8e-19 97.8 101 56.4
Gorai.009G298200 Gossypium raimondii HOM05D002371 ORTHO05D002397 6.8e-19 97.8 101 56.4
Carub.0002s2347 Capsella rubella HOM05D002371 ORTHO05D002397 8.8e-19 97.4 103 53.4
MBI14_g09006_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D002397 8.8e-19 97.4 84 66.7
CANSAT25G2582 Cannabis sativa HOM05D002371 ORTHO05D002397 1.2e-18 97.1 115 56.5
Sp5g31720 Schrenkiella parvula HOM05D002371 ORTHO05D002397 1.2e-18 97.1 98 56.1
AT1G76560 Arabidopsis thaliana HOM05D002371 ORTHO05D002397 2.0e-18 96.3 97 53.6
CARHR070110 Cardamine hirsuta HOM05D002371 ORTHO05D002397 2.6e-18 95.9 98 54.1
Gohir.A10G187400 Gossypium hirsutum HOM05D002371 ORTHO05D002397 7.5e-18 94.4 81 66.7
Potri.005G258400 Populus trichocarpa HOM05D002371 ORTHO05D002397 1.3e-17 93.6 109 52.3
MBI04_g40156_MAGBIO Magnolia biondii HOM05D002371 ORTHO05D002397 2.2e-17 92.8 61 80.3
SalBow6G1854 Salvia bowleyana HOM05D002371 ORTHO05D002397 8.3e-17 90.9 78 64.1
Rhsim07G0258100 Rhododendron simsii HOM05D002371 ORTHO05D002397 5.3e-16 88.2 101 52.5
SEGI_20456 Sequoiadendron giganteum HOM05D002371 ORTHO05D002397 5.3e-16 88.2 83 56.6
SGA_v2.0_scaffold227G43194 Striga asiatica HOM05D002371 ORTHO05D002397 2.0e-15 86.3 96 52.1
Sabra05G0200100 Salix brachista HOM05D002371 ORTHO05D002397 5.9e-15 84.7 98 50.0
Ciclev10013778m.g Citrus clementina HOM05D002371 ORTHO05D002397 6.5e-14 81.3 58 74.1
BcaC08g47168 Brassica carinata HOM05D002371 ORTHO05D002397 4.2e-13 78.6 97 46.4
Solyc04g082910.1 Solanum lycopersicum HOM05D002371 ORTHO05D002397 7.2e-13 77.8 68 63.2
Peaxi162Scf00064g01413 Petunia axillaris HOM05D002371 ORTHO05D002397 9.4e-13 77.4 67 64.2
HPP92_018899 Vanilla planifolia HOM05D002371 ORTHO05D002397 1.0e-11 73.9 95 47.4
HanXRQChr07g0204821 Helianthus annuus HOM05D002371 ORTHO05D002397 1.4e-11 73.6 52 69.2
HPP92_018845 Vanilla planifolia HOM05D002371 ORTHO05D002397 1.4e-11 73.6 94 47.9
Actinidia33601 Actinidia chinensis HOM05D002371 ORTHO05D002397 4.0e-11 72.0 90 50.0
AUR62035187 Chenopodium quinoa HOM05D002371 ORTHO05D002397 5.7e-10 68.2 69 52.2
AUR62041342 Chenopodium quinoa HOM05D002371 ORTHO05D002397 5.7e-10 68.2 69 52.2
Lsat_1_v5_gn_2_127641 Lactuca sativa HOM05D002371 ORTHO05D002397 2.2e-09 66.2 64 60.9
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 3.7e-09 65.5 80 47.5
MBI12_g14584_MAGBIO Magnolia biondii HOM05D002371 ORTHO05D002397 1.1e-08 63.9 80 46.2
TAR636G1360 Trochodendron aralioides HOM05D002371 ORTHO05D002397 1.8e-08 63.2 73 45.2
MBI17_g42227_MAGBIO Magnolia biondii HOM05D002371 ORTHO05D002397 2.4e-08 62.8 66 54.5
MBI17_g47233_MAGBIO Magnolia biondii HOM05D002371 ORTHO05D002397 2.4e-08 62.8 66 54.5
Atru.chr5.1000 Acer truncatum HOM05D002371 ORTHO05D002397 3.5e-07 58.9 72 43.1
CDE02G0856 Ceratophyllum demersum HOM05D002371 ORTHO05D002397 3.5e-07 58.9 73 43.8
COL.COLO4_23231 Corchorus olitorius HOM05D002371 ORTHO05D002397 4.5e-07 58.5 57 45.6
ATR0796G029 Amborella trichopoda HOM05D002371 ORTHO05D002397 5.9e-07 58.2 124 35.5
Thecc.01G313400 Theobroma cacao HOM05D002371 ORTHO05D002397 5.9e-07 58.2 72 43.1
Ciclev10022841m.g Citrus clementina HOM05D002371 ORTHO05D002397 7.7e-07 57.8 73 41.1
Peaxi162Scf00385g00085 Petunia axillaris HOM05D002371 ORTHO05D002397 1.0e-06 57.4 83 45.8
TWI36G0150 Tripterygium wilfordii HOM05D002371 ORTHO05D002397 1.3e-06 57.0 73 43.8
PSO761G0571 Papaver somniferum HOM05D002371 ORTHO05D002397 2.3e-06 56.2 59 50.8
VMungo1383G0519 Vigna mungo HOM05D002371 ORTHO05D002397 2.3e-06 56.2 81 42.0
Sabra14G0089500 Salix brachista HOM05D002371 ORTHO05D002397 2.9e-06 55.8 74 39.2
Glyma.03G219400 Glycine max HOM05D002371 ORTHO05D002397 3.8e-06 55.5 84 35.7
Glyma.19G216300 Glycine max HOM05D002371 ORTHO05D002397 3.8e-06 55.5 84 36.9
Phvul.001G212900 Phaseolus vulgaris HOM05D002371 ORTHO05D002397 3.8e-06 55.5 83 38.6
SEGI_13734 Sequoiadendron giganteum HOM05D002371 ORTHO05D002397 3.8e-06 55.5 101 37.6
Aqoxy2G02769 Aquilegia oxysepala HOM05D002371 ORTHO05D002397 5.0e-06 55.1 73 42.5
Actinidia17898 Actinidia chinensis HOM05D002371 ORTHO05D002397 6.6e-06 54.7 134 32.1
DCAR_018299 Daucus carota HOM05D002371 ORTHO05D002397 8.6e-06 54.3 72 41.7


User provided reference genes

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