Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 6.1e-302 1040.0 531 100.0
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.4e-274 949.1 531 91.3
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.8e-269 932.2 529 88.1
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.8e-269 930.2 529 87.9
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.1e-266 922.9 527 86.9
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 7.6e-260 900.2 522 86.8
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.9e-259 898.3 528 84.8
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 2.5e-255 885.2 527 85.6
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.1e-253 879.8 525 85.0
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.4e-253 879.4 526 84.2
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 2.6e-252 875.2 524 83.4
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 6.0e-249 864.0 525 81.7
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 3.0e-248 861.7 523 83.2
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 4.3e-247 857.8 526 82.5
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 7.4e-247 857.1 525 81.7
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.3e-246 856.3 530 81.1
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.8e-246 855.1 524 81.1
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 5.3e-245 850.9 521 82.5
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.0e-245 850.1 522 80.8
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.6e-244 848.6 521 81.6
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 5.8e-244 847.4 528 82.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.0e-243 846.7 523 81.8
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.9e-243 845.1 520 83.3
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 4.6e-241 837.8 524 80.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 7.9e-241 837.0 520 81.2
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 7.9e-241 837.0 515 82.1
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.1e-239 833.2 521 82.0
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.8e-237 825.9 527 81.4
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 4.1e-237 824.7 519 80.2
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.6e-236 822.0 514 80.2
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 2.2e-235 818.9 519 80.7
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 4.2e-234 814.7 527 77.6
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 5.5e-234 814.3 527 78.9
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.8e-232 809.3 519 78.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.8e-232 809.3 527 78.4
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 3.9e-232 808.1 527 76.7
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.9e-231 805.8 525 77.9
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 5.7e-231 804.3 534 76.8
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 7.4e-231 803.9 531 77.0
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.3e-230 803.1 526 77.2
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.7e-230 801.6 460 85.9
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 6.3e-230 800.8 522 76.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 8.2e-230 800.4 530 77.2
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.4e-229 799.7 530 77.0
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-229 799.7 530 77.0
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.4e-229 799.7 530 77.0
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.4e-229 799.7 528 75.9
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.4e-229 799.7 528 75.0
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.4e-229 798.9 525 77.0
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 6.9e-229 797.3 519 76.9
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 6.9e-229 797.3 525 77.0
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.5e-228 796.2 526 76.6
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-228 796.2 525 76.8
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.0e-228 795.8 530 74.9
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 2.6e-228 795.4 527 76.3
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.6e-228 795.4 527 76.3
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 4.5e-228 794.7 527 76.1
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 7.7e-228 793.9 463 85.1
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.0e-227 793.5 526 76.2
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-227 793.1 526 76.2
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-227 793.1 526 76.2
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.3e-227 793.1 520 75.6
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-227 792.7 527 75.7
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.7e-227 792.7 528 76.7
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 2.2e-227 792.3 525 76.4
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.2e-227 792.3 510 79.4
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.9e-227 792.0 525 76.6
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 6.5e-227 790.8 539 75.1
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.1e-226 790.0 528 76.5
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.4e-226 789.6 520 75.2
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.4e-226 789.6 526 75.7
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.9e-226 789.3 528 75.2
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 5.5e-226 787.7 529 76.4
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.1e-225 785.8 521 76.4
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 3.6e-225 785.0 519 77.5
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.3e-224 782.3 480 82.1
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.9e-224 781.6 516 75.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 6.7e-224 780.8 512 76.0
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.0e-223 779.2 514 76.8
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.3e-222 776.5 527 75.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 8.2e-222 773.9 502 76.5
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 4.1e-221 771.5 515 75.7
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 6.9e-221 770.8 520 76.7
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 2.2e-219 765.8 520 74.0
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 8.5e-219 763.8 534 74.0
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 6.1e-217 757.7 519 71.9
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.8e-216 756.1 512 76.2
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.9e-216 755.0 525 73.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 5.1e-216 754.6 523 71.1
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 6.7e-216 754.2 481 78.6
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 5.7e-215 751.1 433 85.7
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.8e-213 746.1 522 70.9
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 3.1e-213 745.3 481 77.8
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.7e-211 739.6 521 71.4
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.7e-211 739.6 521 71.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.8e-211 738.4 523 70.0
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.9e-210 736.1 526 71.3
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 3.2e-210 735.3 518 71.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 7.2e-210 734.2 517 71.6
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 6.1e-209 731.1 536 71.1
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.0e-208 730.3 517 70.8
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.1e-207 726.9 517 70.6
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.7e-206 723.0 523 68.1
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 6.3e-206 721.1 521 68.9
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 3.5e-204 715.3 521 67.9
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.0e-201 704.1 453 79.5
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 4.4e-199 698.4 460 74.1
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 8.3e-198 694.1 530 65.3
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.0e-195 687.2 456 73.2
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 5.7e-191 671.4 428 78.7
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 5.9e-188 661.4 525 62.7
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 2.5e-186 656.0 518 63.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.4e-183 645.2 497 64.0
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.6e-180 636.7 389 81.0
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.6e-180 636.7 528 61.4
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 4.6e-180 635.2 386 81.6
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-173 614.0 520 60.6
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.6e-170 601.7 383 78.3
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.2e-168 595.1 460 64.6
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 6.8e-168 594.7 522 60.7
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-160 570.5 360 79.7
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 6.8e-160 568.2 391 71.6
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.2e-158 563.1 383 71.5
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 3.6e-153 545.8 319 83.7
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.7e-140 503.1 348 73.3
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.9e-139 499.2 324 74.7
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.4e-133 480.7 473 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.6e-132 477.2 527 47.6
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 7.6e-127 458.4 455 49.7
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 7.6e-119 431.8 539 42.5
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.1e-112 409.8 547 40.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.7e-108 396.7 223 89.2
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.2e-95 354.8 253 73.1
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-76 291.2 194 75.8
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.6e-71 274.6 193 75.1
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 4.0e-67 260.0 181 72.4
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-66 258.1 158 82.3
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 4.4e-66 256.5 151 82.8
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.4e-59 235.0 140 82.9
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.1e-56 225.3 171 64.3
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.0e-51 206.8 141 76.6
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-46 191.8 159 59.7
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-41 174.9 139 65.5
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.8e-35 154.8 98 78.6
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 4.9e-33 146.7 149 54.4
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 2.6e-26 124.4 74 83.8
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.4e-26 124.0 110 59.1
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 6.0e-23 113.2 506 23.9
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.6e-20 105.1 71 70.4
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 8.4e-17 92.8 473 23.7
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.9e-13 81.6 67 58.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.9e-13 81.6 67 58.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.6e-10 71.2 46 71.7
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 2.5e-08 64.7 50 60.0
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 4.2e-08 63.9 46 63.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.5e-07 60.8 46 60.9


User provided reference genes

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