Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 4.3e-181 637.9 326 100.0
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.1e-155 553.5 356 83.1
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 3.7e-140 501.9 354 75.1
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.0e-129 467.2 369 71.0
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 1.7e-129 466.5 370 69.5
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 8.0e-127 457.6 378 66.9
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 1.3e-116 423.7 355 65.1
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 1.3e-113 413.7 354 61.9
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 2.3e-113 412.9 360 62.8
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.5e-112 410.2 365 62.5
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 2.5e-112 409.5 371 60.9
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.3e-112 408.7 360 61.4
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 9.5e-112 407.5 358 63.4
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.1e-111 406.4 358 62.3
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 2.8e-111 406.0 360 63.6
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 4.7e-111 405.2 358 62.6
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 6.1e-111 404.8 360 63.3
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 8.0e-111 404.4 358 63.4
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 8.0e-111 404.4 359 62.7
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 8.0e-111 404.4 354 61.3
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 3.4e-109 399.1 363 61.7
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 3.4e-109 399.1 363 61.7
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 1.3e-108 397.1 320 63.4
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.3e-108 397.1 367 59.1
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.3e-108 397.1 369 59.3
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 8.3e-108 394.4 355 60.0
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 1.1e-107 394.0 351 63.5
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.4e-107 393.7 362 61.0
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 2.4e-107 392.9 355 62.0
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 4.1e-107 392.1 348 60.3
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 7.0e-107 391.3 359 60.7
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 9.2e-107 391.0 344 62.2
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 9.2e-107 391.0 313 66.5
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 9.2e-107 391.0 355 59.7
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 2.0e-106 389.8 354 62.1
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 6.0e-106 388.3 352 61.9
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 1.0e-105 387.5 344 61.3
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.0e-105 387.5 354 60.2
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 2.3e-105 386.3 302 65.9
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 3.0e-105 386.0 327 61.2
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 3.9e-105 385.6 307 65.1
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 5.0e-105 385.2 361 59.3
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 8.6e-105 384.4 307 64.2
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 8.6e-105 384.4 356 60.1
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 3.3e-104 382.5 358 59.2
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 4.3e-104 382.1 315 63.2
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 4.3e-104 382.1 360 58.6
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 5.6e-104 381.7 364 59.1
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.6e-103 380.2 355 59.4
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 1.6e-103 380.2 362 58.8
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 2.1e-103 379.8 331 61.9
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.6e-103 379.0 364 59.6
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 4.7e-103 378.6 330 64.2
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 4.7e-103 378.6 358 59.2
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 6.2e-103 378.3 321 62.3
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 6.2e-103 378.3 314 63.4
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 8.0e-103 377.9 361 58.2
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 8.0e-103 377.9 363 58.7
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 1.1e-102 377.5 357 59.7
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 2.3e-102 376.3 345 60.6
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 2.3e-102 376.3 354 59.9
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 2.3e-102 376.3 367 57.5
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 5.2e-102 375.2 298 64.8
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 2.0e-101 373.2 353 58.9
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 2.6e-101 372.9 306 64.4
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 5.8e-101 371.7 343 60.1
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 2.9e-100 369.4 343 59.8
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 4.9e-100 368.6 350 58.0
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 6.4e-100 368.2 358 56.1
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.9e-99 366.7 368 58.7
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 9.2e-99 364.4 350 59.1
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 2.0e-98 363.2 344 59.0
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 1.7e-97 360.1 352 58.8
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 3.0e-97 359.4 337 61.1
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.9e-97 359.0 315 58.7
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 5.0e-97 358.6 327 60.6
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 5.0e-97 358.6 354 57.3
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 1.5e-96 357.1 350 58.6
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.5e-96 357.1 340 57.9
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 4.3e-96 355.5 353 58.1
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 5.6e-96 355.1 349 58.5
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.2e-95 354.0 345 57.7
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 3.6e-95 352.4 350 56.0
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 6.2e-95 351.7 360 54.4
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 8.1e-95 351.3 340 58.5
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.4e-94 350.5 392 53.6
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 2.3e-94 349.7 356 57.0
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 4.4e-93 345.5 307 60.3
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 3.7e-92 342.4 344 57.0
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.9e-91 340.1 346 56.9
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 4.1e-91 339.0 301 59.8
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 7.1e-91 338.2 297 60.3
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.6e-90 337.0 226 71.7
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.7e-89 333.6 318 57.2
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 5.6e-88 328.6 294 58.2
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.1e-86 324.3 301 58.5
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.2e-85 320.9 273 63.0
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 3.4e-85 319.3 329 55.9
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 4.4e-85 318.9 403 48.4
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 4.4e-85 318.9 297 55.9
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.4e-83 313.9 375 51.7
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 1.3e-81 307.4 248 66.1
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 9.6e-80 301.2 258 60.1
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 6.4e-76 288.5 255 56.9
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.4e-76 288.5 297 53.9
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.4e-75 287.3 240 70.4
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.4e-75 287.3 218 66.1
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 7.8e-74 281.6 370 46.8
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.3e-73 280.0 256 59.4
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.3e-71 274.2 288 52.8
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 3.6e-71 272.7 219 60.7
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 2.6e-69 266.5 337 49.6
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.3e-63 247.7 262 54.6
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.6e-63 247.3 246 54.9
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.6e-58 230.7 243 56.8
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 3.1e-54 216.5 242 54.1
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.5e-51 206.8 326 43.9
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 4.6e-50 202.6 286 41.6
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 7.9e-50 201.8 206 49.0
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 7.2e-43 178.7 279 44.1
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 3.7e-39 166.4 234 41.5
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.1e-38 163.3 204 42.2
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.5e-37 161.0 204 42.2
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 4.5e-37 159.5 195 44.6
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.3e-36 157.9 199 39.7
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.9e-36 156.8 190 43.2
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 2.3e-33 147.1 209 39.7
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 6.7e-33 145.6 111 64.0
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 4.4e-32 142.9 97 70.1
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 3.8e-28 129.8 109 55.0
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 9.4e-27 125.2 141 43.3
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.7e-26 123.6 180 46.1
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 3.3e-24 116.7 82 62.2
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 7.4e-24 115.5 101 55.4
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 1.3e-20 104.8 125 51.2
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 3.2e-19 100.1 60 76.7
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 2.2e-15 87.4 110 45.5
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 9.1e-14 82.0 50 72.0
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 2.2e-12 77.4 107 45.8
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 2.3e-09 67.4 96 43.8
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 1.7e-07 61.2 55 58.2
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 5.4e-06 56.2 178 26.4
RcHm_v2.0_Chr4g0397111 Rosa chinensis HOM05D001659 ORTHO05D001659 5.4e-06 56.2 180 30.0


User provided reference genes

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