Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1353800 Malus domestica HOM05D000097 ORTHO05D000041 3.0e-102 375.2 187 100.0
MD09G1059800 Malus domestica HOM05D000097 ORTHO05D000041 5.9e-66 254.6 190 68.4
MD10G1327800 Malus domestica HOM05D000097 ORTHO05D000041 4.0e-62 241.9 191 68.1
MD05G1353100 Malus domestica HOM05D000097 ORTHO05D000041 1.2e-58 230.3 215 57.2
MD10G1327600 Malus domestica HOM05D000097 ORTHO05D000041 2.2e-44 183.0 191 52.9
Prupe.4G014300 Prunus persica HOM05D000097 ORTHO05D000041 5.4e-43 178.3 189 51.9
Prupe.4G014200 Prunus persica HOM05D000097 ORTHO05D000041 4.5e-42 175.3 189 51.9
MD05G1354800 Malus domestica HOM05D000097 ORTHO05D000041 2.9e-41 172.6 191 50.3
MD05G1353500 Malus domestica HOM05D000097 ORTHO05D000041 1.4e-30 137.1 179 44.7
CiPaw.10G075100 Carya illinoinensis HOM05D000097 ORTHO05D000041 7.8e-26 121.3 186 40.3
Haze_06836 Corylus avellana HOM05D000097 ORTHO05D000041 5.0e-25 118.6 186 36.6
CiPaw.10G075000 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.5e-24 116.3 183 38.3
QL05p071487 Quercus lobata HOM05D000097 ORTHO05D000041 5.6e-24 115.2 186 39.8
Cfa000151 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.6e-23 112.5 185 38.4
Haze_06840 Corylus avellana HOM05D000097 ORTHO05D000041 8.1e-23 111.3 180 36.1
Haze_06867 Corylus avellana HOM05D000097 ORTHO05D000041 1.8e-22 110.2 185 36.2
Haze_06864 Corylus avellana HOM05D000097 ORTHO05D000041 2.3e-22 109.8 186 35.5
Haze_06879 Corylus avellana HOM05D000097 ORTHO05D000041 3.1e-22 109.4 185 36.2
MD05G1025600 Malus domestica HOM05D000097 ORTHO05D000041 5.2e-22 108.6 192 35.9
Haze_06865 Corylus avellana HOM05D000097 ORTHO05D000041 2.6e-21 106.3 182 36.8
Gohir.D06G158000 Gossypium hirsutum HOM05D000097 ORTHO05D000041 2.6e-21 106.3 181 35.9
Prupe.8G030300 Prunus persica HOM05D000097 ORTHO05D000041 4.4e-21 105.5 189 36.5
QL05p071595 Quercus lobata HOM05D000097 ORTHO05D000041 4.4e-21 105.5 190 36.8
Cfa000146 Carpinus fangiana HOM05D000097 ORTHO05D000041 5.8e-21 105.1 176 37.5
Cfa000154 Carpinus fangiana HOM05D000097 ORTHO05D000041 7.5e-21 104.8 180 36.7
Cfa000153 Carpinus fangiana HOM05D000097 ORTHO05D000041 9.8e-21 104.4 189 37.6
Gorai.010G184500 Gossypium raimondii HOM05D000097 ORTHO05D000041 9.8e-21 104.4 183 35.5
Duzib235G0681 Durio zibethinus HOM05D000097 ORTHO05D000041 2.9e-20 102.8 180 35.6
Prupe.8G029400 Prunus persica HOM05D000097 ORTHO05D000041 4.9e-20 102.1 236 30.1
Gorai.010G184600 Gossypium raimondii HOM05D000097 ORTHO05D000041 2.4e-19 99.8 178 37.1
Gohir.D06G158100 Gossypium hirsutum HOM05D000097 ORTHO05D000041 4.1e-19 99.0 178 36.0
Cfa000179 Carpinus fangiana HOM05D000097 ORTHO05D000041 7.1e-19 98.2 183 35.5
COL.COLO4_31840 Corchorus olitorius HOM05D000097 ORTHO05D000041 1.2e-18 97.4 181 34.8
Potri.004G003401 Populus trichocarpa HOM05D000097 ORTHO05D000041 2.1e-18 96.7 186 35.5
Thecc.06G229000 Theobroma cacao HOM05D000097 ORTHO05D000041 1.3e-17 94.0 188 34.6
Thecc.06G229100 Theobroma cacao HOM05D000097 ORTHO05D000041 3.9e-17 92.4 183 32.2
COL.COLO4_31842 Corchorus olitorius HOM05D000097 ORTHO05D000041 5.1e-17 92.0 189 31.7
Gohir.A06G151832 Gossypium hirsutum HOM05D000097 ORTHO05D000041 1.1e-16 90.9 177 34.5
Gohir.D10G010400 Gossypium hirsutum HOM05D000097 ORTHO05D000041 1.1e-16 90.9 176 35.2
Gorai.011G011400 Gossypium raimondii HOM05D000097 ORTHO05D000041 3.3e-16 89.4 176 35.2
Duzib235G1060 Durio zibethinus HOM05D000097 ORTHO05D000041 5.6e-16 88.6 185 34.6
TPR.G29018 Trifolium pratense HOM05D000097 ORTHO05D000041 1.2e-15 87.4 182 33.5
Gohir.A10G010700 Gossypium hirsutum HOM05D000097 ORTHO05D000041 2.8e-15 86.3 180 33.3
Atru.chr1.1016 Acer truncatum HOM05D000097 ORTHO05D000041 1.4e-14 84.0 194 32.5
Ciclev10007907m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.4e-14 84.0 179 32.4
Ciclev10008038m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.4e-14 84.0 179 32.4
COL.COLO4_31839 Corchorus olitorius HOM05D000097 ORTHO05D000041 1.4e-14 84.0 171 34.5
arahy.Tifrunner.gnm1.ann1.F0Z357 Arachis hypogaea HOM05D000097 ORTHO05D000041 1.8e-14 83.6 184 32.1
Lj6g0005075 Lotus japonicus HOM05D000097 ORTHO05D000041 5.2e-14 82.0 190 33.2
Glyma.15G086800 Glycine max HOM05D000097 ORTHO05D000041 6.8e-14 81.6 184 33.2
Gohir.A06G151700 Gossypium hirsutum HOM05D000097 ORTHO05D000041 6.8e-14 81.6 141 34.0
Ca_00479_v3 Cicer arietinum L. HOM05D000097 ORTHO05D000041 8.9e-14 81.3 126 40.5
VMungo1127G1442 Vigna mungo HOM05D000097 ORTHO05D000041 1.2e-13 80.9 182 34.1
Thecc.06G229300 Theobroma cacao HOM05D000097 ORTHO05D000041 2.0e-13 80.1 172 30.8
Glyma.16G082000 Glycine max HOM05D000097 ORTHO05D000041 2.6e-13 79.7 189 29.6
Prupe.7G089200 Prunus persica HOM05D000097 ORTHO05D000041 3.4e-13 79.3 186 31.7
arahy.Tifrunner.gnm1.ann1.F0IIPX Arachis hypogaea HOM05D000097 ORTHO05D000041 5.8e-13 78.6 184 33.2
Lj6g0017328 Lotus japonicus HOM05D000097 ORTHO05D000041 5.8e-13 78.6 185 32.4
QL05p070490 Quercus lobata HOM05D000097 ORTHO05D000041 7.6e-13 78.2 193 32.6
QL05p071217 Quercus lobata HOM05D000097 ORTHO05D000041 7.6e-13 78.2 172 33.7
arahy.Tifrunner.gnm1.ann1.66H3JJ Arachis hypogaea HOM05D000097 ORTHO05D000041 2.2e-12 76.6 185 31.4
arahy.Tifrunner.gnm1.ann1.G0YCKG Arachis hypogaea HOM05D000097 ORTHO05D000041 2.2e-12 76.6 184 32.6
Prupe.8G029900 Prunus persica HOM05D000097 ORTHO05D000041 2.2e-12 76.6 142 37.3
Phvul.011G029900 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 2.9e-12 76.3 182 33.5
Atru.chr1.985 Acer truncatum HOM05D000097 ORTHO05D000041 1.1e-11 74.3 203 30.0
VMungo0331G1839 Vigna mungo HOM05D000097 ORTHO05D000041 1.1e-11 74.3 186 30.6
Ciclev10010739m.g Citrus clementina HOM05D000097 ORTHO05D000041 2.4e-11 73.2 179 30.7
QL05p070833 Quercus lobata HOM05D000097 ORTHO05D000041 2.4e-11 73.2 188 31.9
arahy.Tifrunner.gnm1.ann1.D7UV2U Arachis hypogaea HOM05D000097 ORTHO05D000041 4.1e-11 72.4 185 29.7
Glyma.11G100900 Glycine max HOM05D000097 ORTHO05D000041 7.1e-11 71.6 182 32.4
QL05p070420 Quercus lobata HOM05D000097 ORTHO05D000041 7.1e-11 71.6 168 35.7
GSVIVG01019157001 Vitis vinifera HOM05D000097 ORTHO05D000041 7.1e-11 71.6 183 28.4
Atru.chr10.2324 Acer truncatum HOM05D000097 ORTHO05D000041 9.2e-11 71.2 198 27.8
Potri.015G119401 Populus trichocarpa HOM05D000097 ORTHO05D000041 9.2e-11 71.2 201 28.9
CiPaw.09G099500 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.1e-10 70.1 187 27.8
Ciclev10010540m.g Citrus clementina HOM05D000097 ORTHO05D000041 3.5e-10 69.3 168 26.2
GSVIVG01012268001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.5e-10 69.3 191 29.8
Cfa000156 Carpinus fangiana HOM05D000097 ORTHO05D000041 4.6e-10 68.9 146 30.1
CiPaw.10G075200 Carya illinoinensis HOM05D000097 ORTHO05D000041 6.0e-10 68.6 190 28.9
QL05p070510 Quercus lobata HOM05D000097 ORTHO05D000041 6.0e-10 68.6 188 30.3
Phvul.010G033100 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 7.8e-10 68.2 186 29.6
QL05p070873 Quercus lobata HOM05D000097 ORTHO05D000041 1.0e-09 67.8 188 30.3
Potri.004G003600 Populus trichocarpa HOM05D000097 ORTHO05D000041 2.3e-09 66.6 167 29.9
Psat1g186680 Pisum sativum HOM05D000097 ORTHO05D000041 3.0e-09 66.2 186 28.5
Cfa000149 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.9e-09 65.9 192 29.2
Haze_06873 Corylus avellana HOM05D000097 ORTHO05D000041 5.1e-09 65.5 192 28.1
Atru.chr10.2322 Acer truncatum HOM05D000097 ORTHO05D000041 8.6e-09 64.7 200 28.5
Cfa000145 Carpinus fangiana HOM05D000097 ORTHO05D000041 8.6e-09 64.7 185 28.6
Cfa000142 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.5e-08 63.9 187 28.3
Psat1g194040 Pisum sativum HOM05D000097 ORTHO05D000041 1.5e-08 63.9 183 27.3
Potri.006G281600 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.5e-08 63.9 184 29.9
Potri.011G016300 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.5e-08 63.9 184 29.9
Potri.014G057950 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.5e-08 63.9 191 25.1
MBI04_g26262_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 1.9e-08 63.5 185 25.9
Potri.015G118600 Populus trichocarpa HOM05D000097 ORTHO05D000041 2.5e-08 63.2 168 28.6
Haze_06880 Corylus avellana HOM05D000097 ORTHO05D000041 3.3e-08 62.8 189 25.4
Potri.011G015801 Populus trichocarpa HOM05D000097 ORTHO05D000041 3.3e-08 62.8 184 29.3
Rhsim06G0147300 Rhododendron simsii HOM05D000097 ORTHO05D000041 3.3e-08 62.8 190 26.3
CSS0041661 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 4.3e-08 62.4 198 27.3
Lj4g0005456 Lotus japonicus HOM05D000097 ORTHO05D000041 5.6e-08 62.0 185 27.6
Atru.chr10.2320 Acer truncatum HOM05D000097 ORTHO05D000041 7.3e-08 61.6 181 26.5
Atru.chr10.2326 Acer truncatum HOM05D000097 ORTHO05D000041 7.3e-08 61.6 195 26.2
Manes.16G002500 Manihot esculenta HOM05D000097 ORTHO05D000041 7.3e-08 61.6 197 25.4
Atru.chr1.1018 Acer truncatum HOM05D000097 ORTHO05D000041 9.6e-08 61.2 166 28.9
Ciclev10029847m.g Citrus clementina HOM05D000097 ORTHO05D000041 9.6e-08 61.2 189 30.7
Hma1.2p1_0172F.1_g075950 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 9.6e-08 61.2 186 26.3
Ciclev10028400m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.2e-07 60.8 189 27.5
GSVIVG01005100001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.2e-07 60.8 194 28.9
CiPaw.09G099000 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.6e-07 60.5 189 29.1
CiPaw.09G099200 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.1e-07 60.1 190 28.4
VMungo0540G2266 Vigna mungo HOM05D000097 ORTHO05D000041 2.8e-07 59.7 183 26.8
Potri.011G019500 Populus trichocarpa HOM05D000097 ORTHO05D000041 3.6e-07 59.3 194 25.8
QL05p070771 Quercus lobata HOM05D000097 ORTHO05D000041 3.6e-07 59.3 193 28.5
Atru.chr10.2319 Acer truncatum HOM05D000097 ORTHO05D000041 4.7e-07 58.9 178 28.1
Dinv13945 Davidia involucrata HOM05D000097 ORTHO05D000041 4.7e-07 58.9 193 26.4
Manes.02G185400 Manihot esculenta HOM05D000097 ORTHO05D000041 4.7e-07 58.9 166 25.3
Medtr2g020510 Medicago truncatula HOM05D000097 ORTHO05D000041 4.7e-07 58.9 186 27.4
PSO063G5786 Papaver somniferum HOM05D000097 ORTHO05D009673 4.7e-07 58.9 174 27.0
Potri.014G058100 Populus trichocarpa HOM05D000097 ORTHO05D000041 4.7e-07 58.9 189 24.9
Atru.chr10.2318 Acer truncatum HOM05D000097 ORTHO05D000041 6.2e-07 58.5 204 29.4
Hma1.2p1_0172F.1_g075930 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 6.2e-07 58.5 187 27.3
Manes.15G116900 Manihot esculenta HOM05D000097 ORTHO05D000041 6.2e-07 58.5 63 50.8
Potri.006G281700 Populus trichocarpa HOM05D000097 ORTHO05D000041 6.2e-07 58.5 167 28.7
Potri.006G281800 Populus trichocarpa HOM05D000097 ORTHO05D000041 6.2e-07 58.5 167 28.7
Potri.011G016100 Populus trichocarpa HOM05D000097 ORTHO05D000041 6.2e-07 58.5 167 28.7
Potri.011G016200 Populus trichocarpa HOM05D000097 ORTHO05D000041 6.2e-07 58.5 167 28.7
vmacro12272 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 8.1e-07 58.2 182 25.8
Cfa000912 Carpinus fangiana HOM05D000097 ORTHO05D000041 1.1e-06 57.8 189 28.6
GSVIVG01012107001 Vitis vinifera HOM05D000097 ORTHO05D001641 1.1e-06 57.8 186 23.7
Actinidia38166 Actinidia chinensis HOM05D000097 ORTHO05D009673 1.4e-06 57.4 178 24.7
Ah.16g104570 Amaranthus hybridus HOM05D000097 ORTHO05D000041 1.4e-06 57.4 178 29.8
Ciclev10030399m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.4e-06 57.4 188 28.7
PSO837G0048 Papaver somniferum HOM05D000097 ORTHO05D009673 1.4e-06 57.4 173 25.4
Cfa000150 Carpinus fangiana HOM05D000097 ORTHO05D000041 2.4e-06 56.6 63 47.6
Lsat_1_v5_gn_7_14680 Lactuca sativa HOM05D000097 ORTHO05D000041 2.4e-06 56.6 176 25.6
QL05p071436 Quercus lobata HOM05D000097 ORTHO05D000041 2.4e-06 56.6 63 46.0
Medtr2g020450 Medicago truncatula HOM05D000097 ORTHO05D000041 3.1e-06 56.2 182 26.4
Potri.011G015700 Populus trichocarpa HOM05D000097 ORTHO05D000041 3.1e-06 56.2 59 45.8
QL05p034733 Quercus lobata HOM05D000097 ORTHO05D000041 3.1e-06 56.2 138 29.0
TPR.G1508 Trifolium pratense HOM05D000097 ORTHO05D000041 3.1e-06 56.2 185 26.5
GSVIVG01012264001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.1e-06 56.2 100 38.0
GSVIVG01028837001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.1e-06 56.2 191 28.3
Haze_06869 Corylus avellana HOM05D000097 ORTHO05D000041 4.0e-06 55.8 189 28.0
Glyma.02G268300 Glycine max HOM05D000097 ORTHO05D000041 5.2e-06 55.5 185 26.5
QL05p071177 Quercus lobata HOM05D000097 ORTHO05D000041 6.8e-06 55.1 188 28.7
Dinv13946 Davidia involucrata HOM05D000097 ORTHO05D000041 8.9e-06 54.7 179 28.5
Dinv20112 Davidia involucrata HOM05D000097 ORTHO05D000041 8.9e-06 54.7 197 27.4
Glyma.07G252400 Glycine max HOM05D000097 ORTHO05D000041 8.9e-06 54.7 182 25.3
Lsat_1_v5_gn_4_61781 Lactuca sativa HOM05D000097 ORTHO05D000041 8.9e-06 54.7 179 28.5
Medtr2g020470 Medicago truncatula HOM05D000097 ORTHO05D000041 8.9e-06 54.7 185 24.9
TAR636G0150 Trochodendron aralioides HOM05D000097 ORTHO05D009673 8.9e-06 54.7 178 29.8


User provided reference genes

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