Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 5.2e-38 160.6 84 100.0
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 1.3e-33 146.0 84 90.5
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 1.8e-30 135.6 84 83.3
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 3.5e-26 121.3 80 81.2
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 3.9e-25 117.9 80 80.0
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 1.5e-24 115.9 80 78.8
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 2.0e-21 105.5 78 67.9
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 4.9e-20 100.9 80 65.0
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.1e-19 99.8 79 59.5
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 1.4e-19 99.4 79 62.0
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 1.9e-19 99.0 80 66.2
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.4e-19 98.6 79 58.2
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 4.1e-19 97.8 84 63.1
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 4.1e-19 97.8 84 63.1
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 5.4e-19 97.4 78 66.7
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 1.2e-18 96.3 79 62.0
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 2.1e-18 95.5 80 68.8
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 2.7e-18 95.1 77 62.3
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 7.8e-18 93.6 76 59.2
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 1.0e-17 93.2 80 60.0
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.3e-17 92.8 80 58.8
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 5.1e-17 90.9 80 58.8
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 5.1e-17 90.9 80 58.8
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 8.6e-17 90.1 80 58.8
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 8.6e-17 90.1 85 62.4
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 5.6e-16 87.4 80 55.0
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 5.6e-16 87.4 76 56.6
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 7.3e-16 87.0 80 56.2
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 9.5e-16 86.7 79 60.8
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 1.2e-15 86.3 80 57.5
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 1.6e-15 85.9 80 60.0
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 2.8e-15 85.1 80 58.8
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 6.2e-15 84.0 79 54.4
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 1.1e-14 83.2 76 53.9
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 1.4e-14 82.8 76 57.9
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 1.8e-14 82.4 80 57.5
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 3.1e-14 81.6 80 58.8
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 6.8e-14 80.5 76 56.6
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 2.6e-13 78.6 76 55.3
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 5.8e-13 77.4 79 49.4
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.9e-12 75.1 80 50.0
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.4e-12 73.9 80 48.8
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 6.4e-12 73.9 80 53.8
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 1.1e-11 73.2 78 50.0
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 2.4e-11 72.0 80 53.8
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 4.1e-11 71.2 76 51.3
PGSC0003DMG400016450 Solanum tuberosum HOM05D007037 ORTHO05D006691 2.1e-10 68.9 82 45.1
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 2.7e-10 68.6 84 47.6
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 3.5e-10 68.2 71 47.9
Actinidia09718 Actinidia chinensis HOM05D007037 ORTHO05D006691 4.6e-10 67.8 80 50.0
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 4.6e-10 67.8 80 50.0
Sopen02g025300 Solanum pennellii HOM05D007037 ORTHO05D006691 4.6e-10 67.8 79 46.8
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 7.8e-10 67.0 76 48.7
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 1.7e-09 65.9 80 46.2
Zm00001eb048920 Zea mays HOM05D007037 ORTHO05D006691 1.7e-09 65.9 77 49.4
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 3.0e-09 65.1 80 45.0
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 5.1e-09 64.3 80 50.0
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 6.6e-09 63.9 67 50.7
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 1.1e-08 63.2 80 43.8
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 1.5e-08 62.8 80 45.0
Potri.014G153900 Populus trichocarpa HOM05D009550 ORTHO05D006691 1.5e-08 62.8 83 48.2
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 1.5e-08 62.8 76 47.4
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 1.9e-08 62.4 79 46.8
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 1.9e-08 62.4 80 47.5
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 3.3e-08 61.6 80 45.0
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 3.3e-08 61.6 80 46.2
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 3.3e-08 61.6 83 43.4
Gohir.D13G171150 Gossypium hirsutum HOM05D007037 ORTHO05D006691 5.6e-08 60.8 78 44.9
Gorai.013G189700 Gossypium raimondii HOM05D007037 ORTHO05D006691 5.6e-08 60.8 78 47.4
Gohir.D13G171533 Gossypium hirsutum HOM05D007037 ORTHO05D006691 7.3e-08 60.5 80 46.2
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 7.3e-08 60.5 80 45.0
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 9.6e-08 60.1 76 46.1
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 1.2e-07 59.7 80 43.8
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 1.6e-07 59.3 76 42.1
unitig_32.g11533 Utricularia gibba HOM05D007037 ORTHO05D006691 1.6e-07 59.3 78 44.9
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 2.1e-07 58.9 80 41.2
Rhsim13G0153300 Rhododendron simsii HOM05D007037 ORTHO05D006691 2.1e-07 58.9 79 44.3
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 2.8e-07 58.5 81 45.7
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 4.7e-07 57.8 77 40.3
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 4.7e-07 57.8 78 42.3
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 6.2e-07 57.4 78 42.3
HanXRQChr16g0506491 Helianthus annuus HOM05D007037 ORTHO05D006691 6.2e-07 57.4 82 43.9
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 8.1e-07 57.0 78 43.6
Gohir.D11G101450 Gossypium hirsutum HOM05D007037 ORTHO05D006691 8.1e-07 57.0 78 44.9
Gorai.007G108200 Gossypium raimondii HOM05D007037 ORTHO05D006691 8.1e-07 57.0 78 44.9
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 1.1e-06 56.6 79 43.0
Cc05_g04380 Coffea canephora HOM05D007037 ORTHO05D006691 1.1e-06 56.6 83 45.8
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 1.4e-06 56.2 78 43.6
arahy.Tifrunner.gnm1.ann1.98H95S Arachis hypogaea HOM05D007037 ORTHO05D006691 1.4e-06 56.2 80 47.5
Os03g0574600 Oryza sativa ssp. japonica HOM05D007037 ORTHO05D006691 1.4e-06 56.2 80 45.0
arahy.Tifrunner.gnm1.ann1.CZMF37 Arachis hypogaea HOM05D007037 ORTHO05D006691 1.8e-06 55.8 79 48.1
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 3.1e-06 55.1 78 42.3
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 3.1e-06 55.1 78 41.0
unitig_748.g7588 Utricularia gibba HOM05D007037 ORTHO05D006691 3.1e-06 55.1 79 40.5
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 5.2e-06 54.3 78 41.0
CSS0005463 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 5.2e-06 54.3 90 40.0
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 5.2e-06 54.3 81 40.7
DCAR_019271 Daucus carota HOM05D007037 ORTHO05D006691 6.9e-06 53.9 80 42.5
Aqoxy4G01827 Aquilegia oxysepala HOM05D009550 ORTHO05D006691 9.0e-06 53.5 82 45.1


User provided reference genes

Program Settings