Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 4.1e-173 611.3 308 100.0
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 2.9e-147 525.4 334 81.1
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 3.3e-138 495.4 334 78.1
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 2.1e-113 412.9 343 66.8
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 4.6e-84 315.5 350 52.6
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 4.5e-79 298.9 350 50.3
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.5e-79 298.9 350 50.3
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.0e-78 295.4 350 50.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 5.5e-69 265.4 348 47.4
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 2.0e-66 256.9 351 46.4
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 4.4e-66 255.8 352 46.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 2.2e-65 253.4 365 45.2
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 4.1e-64 249.2 349 47.0
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.1e-61 241.1 365 44.4
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 9.4e-61 238.0 368 41.0
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 2.7e-60 236.5 368 40.8
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.8e-59 233.8 348 43.7
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.5e-58 230.7 371 39.6
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 2.2e-57 226.9 363 39.9
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 2.4e-56 223.4 336 42.9
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 3.1e-56 223.0 361 41.6
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 7.0e-56 221.9 348 40.8
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.0e-55 220.3 362 40.6
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.6e-55 219.9 346 41.9
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 4.5e-55 219.2 348 39.4
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.5e-55 219.2 366 39.3
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 1.3e-54 217.6 336 42.3
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 8.5e-54 214.9 361 40.4
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.1e-53 214.5 361 40.7
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.5e-53 214.2 365 40.8
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 3.2e-53 213.0 361 40.4
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 4.2e-53 212.6 361 40.4
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.0e-51 208.0 360 40.3
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.0e-50 203.8 363 40.5
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 2.0e-50 203.8 365 38.1
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.2e-49 200.3 348 39.9
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.2e-46 190.3 332 38.9
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-45 188.0 333 39.9
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 2.5e-45 186.8 337 38.9
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 9.4e-45 184.9 362 36.5
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.6e-44 184.1 368 37.8
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 2.1e-44 183.7 337 38.6
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 2.7e-44 183.3 359 37.0
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 3.6e-44 183.0 342 40.4
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.0e-43 181.4 362 37.0
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 4.0e-43 179.5 360 36.7
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.0e-43 179.5 335 38.8
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.0e-43 179.5 335 39.1
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 4.0e-43 179.5 360 37.2
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 5.2e-43 179.1 372 37.9
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 6.8e-43 178.7 371 37.2
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 6.8e-43 178.7 364 35.7
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 8.8e-43 178.3 328 39.9
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 7.5e-42 175.3 368 36.4
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 9.8e-42 174.9 360 35.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.8e-41 173.3 347 37.5
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 3.7e-41 172.9 360 35.8
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 8.3e-41 171.8 347 36.6
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 9.1e-40 168.3 361 35.7
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 2.7e-39 166.8 353 35.4
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.7e-38 164.1 359 35.4
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 2.3e-38 163.7 342 34.8
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 5.0e-38 162.5 353 36.8
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.5e-37 160.2 252 44.0
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 9.5e-37 158.3 354 34.2
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 6.1e-36 155.6 372 33.3
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 8.0e-36 155.2 340 35.0
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 8.0e-36 155.2 352 33.5
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.0e-35 154.8 332 36.7
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.0e-35 154.8 332 36.7
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.8e-35 154.1 373 35.1
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.3e-35 153.7 337 36.2
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.0e-35 153.3 240 42.1
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 5.2e-35 152.5 337 35.3
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 5.2e-35 152.5 319 36.4
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 5.2e-35 152.5 360 34.7
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.2e-34 151.4 333 35.7
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.2e-34 151.4 333 35.7
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.5e-34 151.0 332 34.9
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 2.0e-34 150.6 332 34.9
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 5.7e-34 149.1 334 36.2
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 9.8e-34 148.3 341 36.1
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 2.2e-33 147.1 343 37.0
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 3.7e-33 146.4 284 37.3
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 6.3e-33 145.6 350 36.6
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.1e-32 144.8 351 37.3
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 3.1e-32 143.3 339 33.9
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 4.1e-32 142.9 346 32.7
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 7.0e-32 142.1 334 35.3
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 3.9e-30 136.3 359 33.1
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 5.0e-30 136.0 337 33.2
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.5e-29 134.4 337 34.4
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 1.9e-29 134.0 346 33.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.5e-29 133.7 341 33.1
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 2.8e-28 130.2 360 31.7
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 6.1e-28 129.0 330 32.4
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.8e-27 127.5 300 35.3
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.5e-26 124.4 344 30.5
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 7.5e-26 122.1 268 37.3
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.3e-25 121.3 345 31.0
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.9e-24 117.5 347 32.3
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.7e-23 113.6 336 29.5
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 7.8e-23 112.1 345 31.9
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.3e-22 111.3 217 37.3
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 3.0e-22 110.2 262 33.6
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 9.5e-21 105.1 211 32.7
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.9e-19 98.6 254 31.1
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.9e-19 98.6 254 31.1
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 6.4e-17 92.4 327 28.7
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.1e-16 91.7 301 31.6
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.4e-16 91.3 167 40.7
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-14 84.7 223 34.1
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 3.9e-14 83.2 207 31.9
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.4e-10 69.7 254 28.3
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.1e-08 65.1 44 70.5
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 2.4e-08 63.9 159 35.8
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 2.7e-07 60.5 192 30.2
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.5e-07 60.1 38 68.4


User provided reference genes

Program Settings